Scpep1 (serine carboxypeptidase 1) - Rat Genome Database

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Gene: Scpep1 (serine carboxypeptidase 1) Chinchilla lanigera
Analyze
Symbol: Scpep1
Name: serine carboxypeptidase 1
RGD ID: 8986950
Description: ENCODES a protein that exhibits serine-type carboxypeptidase activity (ortholog); INVOLVED IN blood vessel diameter maintenance (ortholog); negative regulation of blood pressure (ortholog); retinoic acid metabolic process (ortholog); ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); Joubert syndrome 1 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: retinoid-inducible serine carboxypeptidase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554515,846,552 - 5,876,851 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554515,847,371 - 5,876,286 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Scpep1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554515,846,552 - 5,876,851 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554515,847,371 - 5,876,286 (-)NCBIChiLan1.0ChiLan1.0
SCPEP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381756,978,131 - 57,006,768 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1756,978,129 - 57,006,768 (+)EnsemblGRCh38hg38GRCh38
GRCh371755,055,492 - 55,084,129 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361752,410,467 - 52,439,128 (+)NCBINCBI36Build 36hg18NCBI36
Build 341752,410,487 - 52,439,123NCBI
Celera1751,517,044 - 51,545,707 (+)NCBICelera
Cytogenetic Map17q22NCBI
HuRef1750,416,496 - 50,445,158 (+)NCBIHuRef
CHM1_11755,120,690 - 55,149,356 (+)NCBICHM1_1
T2T-CHM13v2.01757,855,772 - 57,884,410 (+)NCBIT2T-CHM13v2.0
Scpep1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391188,814,846 - 88,846,268 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1188,814,846 - 88,846,291 (-)EnsemblGRCm39 Ensembl
GRCm381188,924,020 - 88,955,442 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1188,924,020 - 88,955,465 (-)EnsemblGRCm38mm10GRCm38
MGSCv371188,785,334 - 88,816,756 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361188,740,110 - 88,771,522 (-)NCBIMGSCv36mm8
Celera1198,535,098 - 98,568,204 (-)NCBICelera
Cytogenetic Map11CNCBI
cM Map1154.34NCBI
Scpep1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81074,200,491 - 74,230,107 (-)NCBIGRCr8
mRatBN7.21073,703,275 - 73,732,892 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1073,703,278 - 73,732,850 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1078,318,490 - 78,347,988 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01077,823,415 - 77,852,910 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01073,286,585 - 73,316,078 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01076,230,371 - 76,263,866 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1076,230,373 - 76,263,866 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01073,846,394 - 73,880,406 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41077,347,473 - 77,377,945 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11077,361,844 - 77,392,315 (-)NCBI
Celera1072,609,315 - 72,638,737 (-)NCBICelera
Cytogenetic Map10q26NCBI
SCPEP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21973,151,012 - 73,179,770 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11777,961,953 - 77,990,686 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01751,055,293 - 51,084,032 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11755,915,746 - 55,944,374 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1755,915,746 - 55,944,377 (+)Ensemblpanpan1.1panPan2
SCPEP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1931,770,494 - 31,803,741 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl931,774,602 - 31,803,741 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha931,010,418 - 31,043,464 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0932,578,347 - 32,611,364 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl932,578,396 - 32,611,601 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1931,363,955 - 31,397,132 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0931,647,649 - 31,680,837 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0931,731,073 - 31,764,270 (+)NCBIUU_Cfam_GSD_1.0
Scpep1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560231,143,599 - 31,171,166 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364905,904,396 - 5,939,915 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364905,903,884 - 5,939,953 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCPEP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1233,265,562 - 33,298,142 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11233,265,509 - 33,296,805 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21233,995,016 - 34,027,373 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SCPEP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11636,398,059 - 36,427,429 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1636,398,615 - 36,427,404 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660777,216,719 - 7,246,075 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Scpep1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479512,016,302 - 12,042,353 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479512,016,363 - 12,041,615 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000022319   ⟹   ENSCLAP00000022114
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554515,846,552 - 5,876,851 (-)Ensembl
RefSeq Acc Id: XM_005394064   ⟹   XP_005394121
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554515,847,371 - 5,876,286 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005394121 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000022114
  ENSCLAP00000022114.1
RefSeq Acc Id: XP_005394121   ⟸   XM_005394064
- UniProtKB: A0A8C2W230 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000022114   ⟸   ENSCLAT00000022319


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015159 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000022319 ENTREZGENE
  ENSCLAT00000022319.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1820 UniProtKB/TrEMBL
InterPro AB_hydrolase UniProtKB/TrEMBL
  Peptidase_S10 UniProtKB/TrEMBL
  Ser_caboxypep_ser_AS UniProtKB/TrEMBL
NCBI Gene Scpep1 ENTREZGENE
PANTHER PTHR11802 UniProtKB/TrEMBL
  RETINOID-INDUCIBLE SERINE CARBOXYPEPTIDASE UniProtKB/TrEMBL
Pfam Peptidase_S10 UniProtKB/TrEMBL
PRINTS CRBOXYPTASEC UniProtKB/TrEMBL
PROSITE CARBOXYPEPT_SER_SER UniProtKB/TrEMBL
Superfamily-SCOP SSF53474 UniProtKB/TrEMBL
UniProt A0A8C2W230 ENTREZGENE, UniProtKB/TrEMBL