Ift140 (intraflagellar transport 140) - Rat Genome Database

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Gene: Ift140 (intraflagellar transport 140) Chinchilla lanigera
Analyze
Symbol: Ift140
Name: intraflagellar transport 140
RGD ID: 8953426
Description: INVOLVED IN cilium assembly (ortholog); determination of left/right symmetry (ortholog); embryonic brain development (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); asphyxiating thoracic dystrophy 1 (ortholog); epilepsy (ortholog); FOUND IN axoneme (ortholog); centriole (ortholog); centrosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: intraflagellar transport 140 homolog; intraflagellar transport protein 140 homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544215,630,501 - 15,718,484 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544215,625,429 - 15,719,006 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ift140
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544215,630,501 - 15,718,484 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544215,625,429 - 15,719,006 (+)NCBIChiLan1.0ChiLan1.0
IFT140
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38161,510,427 - 1,612,072 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl161,510,427 - 1,612,072 (-)EnsemblGRCh38hg38GRCh38
GRCh37161,560,428 - 1,662,073 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36161,500,431 - 1,597,299 (-)NCBINCBI36Build 36hg18NCBI36
Celera161,772,703 - 1,874,383 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef161,486,013 - 1,587,550 (-)NCBIHuRef
CHM1_1161,560,388 - 1,662,050 (-)NCBICHM1_1
T2T-CHM13v2.0161,525,455 - 1,627,919 (-)NCBIT2T-CHM13v2.0
Ift140
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391725,235,056 - 25,318,461 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1725,235,059 - 25,318,469 (+)EnsemblGRCm39 Ensembl
GRCm381725,016,083 - 25,099,499 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1725,016,085 - 25,099,495 (+)EnsemblGRCm38mm10GRCm38
MGSCv371725,153,031 - 25,236,444 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361724,744,323 - 24,827,086 (+)NCBIMGSCv36mm8
Celera1725,543,013 - 25,624,378 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.53NCBI
Ift140
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,537,134 - 14,624,926 (+)NCBIGRCr8
mRatBN7.21014,032,665 - 14,121,682 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1014,032,648 - 14,120,433 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01014,373,668 - 14,461,509 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,373,679 - 14,461,160 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01014,189,328 - 14,276,940 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41014,258,556 - 14,348,468 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1013,711,169 - 13,793,096 (+)NCBICelera
Cytogenetic Map10q12NCBI
IFT140
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2181,772,348 - 1,877,046 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1165,560,156 - 5,659,086 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v016130,150 - 232,369 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1161,566,309 - 1,662,833 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl161,566,824 - 1,658,884 (-)Ensemblpanpan1.1panPan2
IFT140
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1639,262,887 - 39,308,912 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl639,295,045 - 39,308,758 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha640,497,349 - 40,577,227 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0639,574,931 - 39,655,255 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl639,577,733 - 39,655,241 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1639,252,090 - 39,332,397 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0639,224,274 - 39,304,564 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,702,970 - 39,783,289 (+)NCBIUU_Cfam_GSD_1.0
Ift140
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344104,290,046 - 104,364,999 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366942,344,283 - 2,423,520 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366942,344,448 - 2,419,396 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IFT140
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl340,309,635 - 40,372,135 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1340,309,298 - 40,372,139 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2341,776,363 - 41,835,312 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IFT140
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.151,419,432 - 1,523,342 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl51,415,664 - 1,521,843 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606829,562,562 - 29,667,409 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ift140
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624913621,203 - 711,493 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624913616,283 - 712,040 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000019923   ⟹   ENSCLAP00000019730
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544215,630,501 - 15,718,484 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000019924   ⟹   ENSCLAP00000019731
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544215,641,005 - 15,650,213 (+)Ensembl
RefSeq Acc Id: XM_005391568   ⟹   XP_005391625
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544215,625,524 - 15,719,006 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013517666   ⟹   XP_013373120
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544215,625,429 - 15,719,006 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013517667   ⟹   XP_013373121
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544215,626,194 - 15,719,006 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013517668   ⟹   XP_013373122
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544215,625,524 - 15,719,006 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005391625 (Get FASTA)   NCBI Sequence Viewer  
  XP_013373120 (Get FASTA)   NCBI Sequence Viewer  
  XP_013373121 (Get FASTA)   NCBI Sequence Viewer  
  XP_013373122 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000019730
  ENSCLAP00000019730.1
  ENSCLAP00000019731.1
Reference Protein Sequences
RefSeq Acc Id: XP_005391625   ⟸   XM_005391568
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VRU8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373120   ⟸   XM_013517666
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VRU8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373122   ⟸   XM_013517668
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VRU8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373121   ⟸   XM_013517667
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VRU8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000019731   ⟸   ENSCLAT00000019924
RefSeq Acc Id: ENSCLAP00000019730   ⟸   ENSCLAT00000019923
Protein Domains
Anaphase-promoting complex subunit 4-like WD40


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013535 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000019923 ENTREZGENE
  ENSCLAT00000019923.1 UniProtKB/TrEMBL
  ENSCLAT00000019924.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.470 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
InterPro Apc4_WD40_dom UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene Ift140 ENTREZGENE
PANTHER IFT140/172-RELATED UniProtKB/TrEMBL
  INTRAFLAGELLAR TRANSPORT PROTEIN 140 HOMOLOG UniProtKB/TrEMBL
Pfam ANAPC4_WD40 UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP DPP6 N-terminal domain-like UniProtKB/TrEMBL
  SSF50978 UniProtKB/TrEMBL
UniProt A0A8C2VRU8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VRV9_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Ift140  intraflagellar transport 140    intraflagellar transport 140 homolog (Chlamydomonas)  Symbol and/or name change 5135510 APPROVED