Acox3 (acyl-CoA oxidase 3, pristanoyl) - Rat Genome Database

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Gene: Acox3 (acyl-CoA oxidase 3, pristanoyl) Chinchilla lanigera
Analyze
Symbol: Acox3
Name: acyl-CoA oxidase 3, pristanoyl
RGD ID: 8949910
Description: ENCODES a protein that exhibits fatty acid binding (ortholog); flavin adenine dinucleotide binding (ortholog); pristanoyl-CoA oxidase activity (ortholog); INVOLVED IN fatty acid beta-oxidation using acyl-CoA oxidase (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); genetic disease (ortholog); FOUND IN peroxisome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: peroxisomal acyl-coenzyme A oxidase 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555142,656,144 - 2,685,896 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555142,653,502 - 2,690,452 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
peroxisome  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Acox3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555142,656,144 - 2,685,896 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555142,653,502 - 2,690,452 (+)NCBIChiLan1.0ChiLan1.0
ACOX3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3848,355,305 - 8,440,723 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl48,366,282 - 8,440,723 (-)EnsemblGRCh38hg38GRCh38
GRCh3748,368,009 - 8,442,450 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3648,418,909 - 8,493,352 (-)NCBINCBI36Build 36hg18NCBI36
Build 3448,486,518 - 8,560,499NCBI
Celera48,261,321 - 8,335,759 (-)NCBICelera
Cytogenetic Map4p16.1NCBI
HuRef48,287,364 - 8,362,315 (-)NCBIHuRef
CHM1_148,366,366 - 8,440,788 (-)NCBICHM1_1
T2T-CHM13v2.048,337,453 - 8,420,469 (-)NCBIT2T-CHM13v2.0
Acox3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39535,740,293 - 35,772,397 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl535,740,384 - 35,772,696 (+)EnsemblGRCm39 Ensembl
GRCm38535,582,981 - 35,614,208 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl535,583,040 - 35,615,352 (+)EnsemblGRCm38mm10GRCm38
MGSCv37535,925,709 - 35,956,450 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36535,899,921 - 35,930,662 (+)NCBIMGSCv36mm8
Celera533,056,108 - 33,087,085 (+)NCBICelera
Cytogenetic Map5B3NCBI
cM Map518.32NCBI
Acox3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81479,358,604 - 79,405,160 (-)NCBIGRCr8
mRatBN7.21475,133,986 - 75,176,767 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1475,094,676 - 75,176,205 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1479,575,514 - 79,629,707 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01480,816,379 - 80,870,575 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01477,261,371 - 77,315,558 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01480,313,202 - 80,358,115 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1480,314,431 - 80,355,420 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01479,942,668 - 79,982,780 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41480,769,000 - 80,809,809 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11480,771,390 - 80,812,200 (-)NCBI
Celera1474,065,866 - 74,104,532 (-)NCBICelera
Cytogenetic Map14q21NCBI
ACOX3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v238,642,020 - 8,727,303 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan148,569,231 - 8,654,531 (-)NCBINHGRI_mPanPan1
PanPan1.148,432,788 - 8,506,499 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl48,432,788 - 8,494,157 (-)Ensemblpanpan1.1panPan2
ACOX3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1360,154,012 - 60,205,696 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl360,153,775 - 60,203,554 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha362,804,141 - 62,856,135 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0360,631,684 - 60,683,139 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl360,628,819 - 60,680,866 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1360,123,908 - 60,162,124 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0360,327,224 - 60,379,691 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0360,685,106 - 60,736,638 (-)NCBIUU_Cfam_GSD_1.0
Acox3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528565,992,882 - 66,029,673 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647719,694,555 - 19,731,386 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647719,696,274 - 19,731,338 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACOX3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl82,716,918 - 2,770,801 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.182,716,913 - 2,756,221 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.284,391,443 - 4,418,723 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACOX3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12744,313,297 - 44,366,702 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666051635,738 - 689,992 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acox3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475523,995,089 - 24,024,083 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475523,995,256 - 24,026,581 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000013377   ⟹   ENSCLAP00000013226
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555142,656,144 - 2,685,896 (+)Ensembl
RefSeq Acc Id: XM_005408770   ⟹   XP_005408827
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555142,653,938 - 2,690,452 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005408774   ⟹   XP_005408831
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555142,653,944 - 2,687,499 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506788   ⟹   XP_013362242
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555142,653,933 - 2,690,452 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506789   ⟹   XP_013362243
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555142,653,502 - 2,690,452 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506790   ⟹   XP_013362244
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555142,653,502 - 2,690,452 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506791   ⟹   XP_013362245
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555142,653,502 - 2,690,452 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506792   ⟹   XP_013362246
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555142,653,942 - 2,687,499 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506793   ⟹   XP_013362247
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555142,653,931 - 2,683,679 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001231764
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555142,653,942 - 2,687,499 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001231765
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555142,653,942 - 2,688,108 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005408827   ⟸   XM_005408770
- Peptide Label: isoform X3
- UniProtKB: A0A8C2YP91 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005408831   ⟸   XM_005408774
- Peptide Label: isoform X5
- UniProtKB: A0A8C2YP91 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362243   ⟸   XM_013506789
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YP91 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362245   ⟸   XM_013506791
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YP91 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362244   ⟸   XM_013506790
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YP91 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362247   ⟸   XM_013506793
- Peptide Label: isoform X6
- UniProtKB: A0A8C2YP91 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362242   ⟸   XM_013506788
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YP91 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362246   ⟸   XM_013506792
- Peptide Label: isoform X4
- UniProtKB: A0A8C2YP91 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000013226   ⟸   ENSCLAT00000013377
Protein Domains
Acyl-CoA dehydrogenase/oxidase C-terminal   Acyl-CoA oxidase C-terminal   Acyl-CoA oxidase/dehydrogenase middle   Acyl-coenzyme A oxidase N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009133 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000013377 ENTREZGENE
  ENSCLAT00000013377.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.540.10 UniProtKB/TrEMBL
  2.40.110.10 UniProtKB/TrEMBL
  Butyryl-CoA Dehydrogenase, subunit A, domain 3 UniProtKB/TrEMBL
InterPro ACO UniProtKB/TrEMBL
  Acyl-CoA_ox_N UniProtKB/TrEMBL
  Acyl-CoA_Oxase/DH_cen-dom UniProtKB/TrEMBL
  Acyl-CoA_Oxase/DH_mid-dom_sf UniProtKB/TrEMBL
  Acyl-CoA_oxidase UniProtKB/TrEMBL
  Acyl-CoA_oxidase_C UniProtKB/TrEMBL
  AcylCo_DH-like_C UniProtKB/TrEMBL
  AcylCo_DH/oxidase_C UniProtKB/TrEMBL
  AcylCoA_DH/ox_N_sf UniProtKB/TrEMBL
  AcylCoA_DH/oxidase_NM_dom UniProtKB/TrEMBL
NCBI Gene Acox3 ENTREZGENE
PANTHER PEROXISOMAL ACYL-COENZYME A OXIDASE 3 UniProtKB/TrEMBL
  PTHR10909 UniProtKB/TrEMBL
Pfam ACOX UniProtKB/TrEMBL
  Acyl-CoA_dh_1 UniProtKB/TrEMBL
  Acyl-CoA_dh_M UniProtKB/TrEMBL
  Acyl-CoA_ox_N UniProtKB/TrEMBL
PIRSF Acyl-CoA_oxidase UniProtKB/TrEMBL
Superfamily-SCOP SSF47203 UniProtKB/TrEMBL
  SSF56645 UniProtKB/TrEMBL
UniProt A0A8C2YP91 ENTREZGENE, UniProtKB/TrEMBL