Notch2 (notch receptor 2) - Rat Genome Database

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Gene: Notch2 (notch receptor 2) Chinchilla lanigera
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Symbol: Notch2
Name: notch receptor 2
RGD ID: 8948357
Description: ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); enzyme binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); atrial septum morphogenesis (ortholog); BMP signaling pathway (ortholog); PARTICIPATES IN Notch signaling pathway; ASSOCIATED WITH Acroosteolysis Dominant Type (ortholog); Alagille syndrome (ortholog); ALAGILLE SYNDROME 2 (ortholog); FOUND IN cell surface (ortholog); cilium (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: neurogenic locus notch homolog protein 2; notch 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555681,660,731 - 1,809,173 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555681,660,357 - 1,812,285 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
animal organ morphogenesis  (ISO)
atrial septum morphogenesis  (ISO)
BMP signaling pathway  (ISO)
bone remodeling  (ISO)
cell fate determination  (ISO)
cell population proliferation  (ISO)
cellular response to tumor cell  (ISO)
cholangiocyte proliferation  (ISO)
ciliary body morphogenesis  (ISO)
defense response to bacterium  (ISO)
determination of left/right symmetry  (ISO)
embryonic limb morphogenesis  (ISO)
glomerular capillary formation  (ISO)
heart looping  (ISO)
hepatocyte proliferation  (ISO)
humoral immune response  (ISO)
in utero embryonic development  (ISO)
inflammatory response to antigenic stimulus  (ISO)
intracellular signal transduction  (ISO)
intrahepatic bile duct development  (ISO)
left/right axis specification  (ISO)
liver development  (ISO)
liver morphogenesis  (ISO)
marginal zone B cell differentiation  (ISO)
morphogenesis of an epithelial sheet  (ISO)
multicellular organism growth  (ISO)
myeloid dendritic cell differentiation  (ISO)
negative regulation of gene expression  (ISO)
negative regulation of transcription by RNA polymerase II  (ISO)
Notch signaling pathway  (ISO)
placenta blood vessel development  (ISO)
placenta development  (ISO)
podocyte development  (ISO)
positive regulation of apoptotic process  (ISO)
positive regulation of BMP signaling pathway  (ISO)
positive regulation of cell population proliferation  (ISO)
positive regulation of ERK1 and ERK2 cascade  (ISO)
positive regulation of keratinocyte proliferation  (ISO)
positive regulation of miRNA transcription  (ISO)
positive regulation of osteoclast differentiation  (ISO)
positive regulation of Ras protein signal transduction  (ISO)
positive regulation of smooth muscle cell differentiation  (ISO)
positive regulation of transcription by RNA polymerase II  (ISO)
proximal tubule development  (ISO)
pulmonary valve morphogenesis  (ISO)
regulation of osteoclast development  (ISO)
regulation of transcription by RNA polymerase II  (ISO)
tissue regeneration  (ISO)
wound healing  (ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Notch2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555681,660,731 - 1,809,173 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555681,660,357 - 1,812,285 (+)NCBIChiLan1.0ChiLan1.0
NOTCH2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381119,911,553 - 120,069,662 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1119,911,553 - 120,100,779 (-)EnsemblGRCh38hg38GRCh38
GRCh371120,454,176 - 120,612,276 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361120,255,699 - 120,413,799 (-)NCBINCBI36Build 36hg18NCBI36
Build 341120,166,219 - 120,324,318NCBI
Celera1118,684,898 - 118,760,431 (-)NCBICelera
Cytogenetic Map1p12NCBI
HuRef1118,312,713 - 118,398,477 (-)NCBIHuRef
CHM1_11120,569,670 - 120,727,793 (-)NCBICHM1_1
T2T-CHM13v2.01119,924,810 - 120,082,923 (-)NCBIT2T-CHM13v2.0
Notch2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39397,920,854 - 98,057,683 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl397,920,843 - 98,057,677 (+)EnsemblGRCm39 Ensembl
GRCm38398,013,538 - 98,150,367 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl398,013,527 - 98,150,361 (+)EnsemblGRCm38mm10GRCm38
MGSCv37397,817,461 - 97,954,290 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36398,098,943 - 98,232,854 (+)NCBIMGSCv36mm8
Celera399,412,506 - 99,549,473 (+)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map342.42NCBI
Notch2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82188,299,336 - 188,432,823 (+)NCBIGRCr8
mRatBN7.22185,610,594 - 185,744,088 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2185,610,589 - 185,744,088 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2193,258,974 - 193,392,488 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02191,067,260 - 191,200,638 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02185,891,558 - 186,025,066 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02200,187,184 - 200,320,403 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2200,187,179 - 200,320,215 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,597,473 - 207,599,560 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02219,662,511 - 219,793,306 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42192,839,350 - 192,986,589 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2178,101,416 - 178,234,556 (+)NCBICelera
Cytogenetic Map2q34NCBI
NOTCH2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21112,490,679 - 112,716,322 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11112,158,059 - 112,315,530 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0182,457,829 - 82,615,142 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11117,537,162 - 117,612,840 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1117,538,243 - 117,612,840 (+)Ensemblpanpan1.1panPan2
NOTCH2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11756,854,825 - 57,020,157 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1756,860,429 - 57,020,857 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1756,476,088 - 56,659,161 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01757,717,260 - 57,900,443 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1757,739,989 - 57,996,124 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11756,764,520 - 56,924,479 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01756,800,478 - 56,960,572 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01757,426,245 - 57,608,931 (-)NCBIUU_Cfam_GSD_1.0
LOC101965998
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050582,620,590 - 2,684,163 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936872390,852 - 536,321 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936872454,273 - 539,544 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOTCH2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4100,981,636 - 101,150,195 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14100,951,522 - 101,152,348 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24110,927,023 - 110,985,673 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NOTCH2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12013,712,140 - 13,871,777 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2013,712,292 - 13,871,784 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603816,342,675 - 16,501,918 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Notch2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477215,571,998 - 15,726,426 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477215,572,350 - 15,726,312 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000000811   ⟹   ENSCLAP00000000774
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555681,660,731 - 1,809,173 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000000812   ⟹   ENSCLAP00000000775
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555681,660,731 - 1,809,170 (+)Ensembl
RefSeq Acc Id: XM_005413481   ⟹   XP_005413538
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555681,660,481 - 1,812,285 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013509349   ⟹   XP_013364803
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555681,690,662 - 1,812,285 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013509350   ⟹   XP_013364804
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555681,660,357 - 1,812,285 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005413538 (Get FASTA)   NCBI Sequence Viewer  
  XP_013364803 (Get FASTA)   NCBI Sequence Viewer  
  XP_013364804 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000000774
  ENSCLAP00000000774.1
  ENSCLAP00000000775.1
RefSeq Acc Id: XP_005413538   ⟸   XM_005413481
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UGW3 (UniProtKB/TrEMBL),   A0A8C2UGW7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013364804   ⟸   XM_013509350
- Peptide Label: isoform X3
- UniProtKB: A0A8C2UGW7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013364803   ⟸   XM_013509349
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UGW7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000000774   ⟸   ENSCLAT00000000811
RefSeq Acc Id: ENSCLAP00000000775   ⟸   ENSCLAT00000000812
Protein Domains
EGF-like   LNR


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000609 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000000811 ENTREZGENE
  ENSCLAT00000000811.1 UniProtKB/TrEMBL
  ENSCLAT00000000812.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
  3.30.300.320 UniProtKB/TrEMBL
  3.30.70.3310 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_CS UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
  Notch UniProtKB/TrEMBL
  Notch-like_dom_sf UniProtKB/TrEMBL
  Notch_2 UniProtKB/TrEMBL
  Notch_C UniProtKB/TrEMBL
  Notch_dom UniProtKB/TrEMBL
  Notch_NOD_dom UniProtKB/TrEMBL
  Notch_NODP_dom UniProtKB/TrEMBL
NCBI Gene Notch2 ENTREZGENE
PANTHER EGF-LIKE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  NOTCH LIGAND FAMILY MEMBER UniProtKB/TrEMBL
  NOTCH RECEPTOR 2 UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  hEGF UniProtKB/TrEMBL
  NOD UniProtKB/TrEMBL
  NODP UniProtKB/TrEMBL
  Notch UniProtKB/TrEMBL
PIRSF Notch UniProtKB/TrEMBL
PRINTS EGFBLOOD UniProtKB/TrEMBL
  LNOTCHREPEAT UniProtKB/TrEMBL
  NOTCH UniProtKB/TrEMBL
  NOTCH2 UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  ASX_HYDROXYL UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  LNR UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  DUF3454 UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  NOD UniProtKB/TrEMBL
  NODP UniProtKB/TrEMBL
  SM00004 UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF48403 UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
  SSF90193 UniProtKB/TrEMBL
UniProt A0A8C2UGW3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UGW7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-08 Notch2  notch receptor 2    notch 2  Symbol and/or name change 5135510 APPROVED