LOC102023166 (cytochrome P450 26B1) - Rat Genome Database

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Gene: LOC102023166 (cytochrome P450 26B1) Chinchilla lanigera
Analyze
Symbol: LOC102023166 (Ensembl: CYP26B1)
Name: cytochrome P450 26B1
RGD ID: 8946047
Description: ENCODES a protein that exhibits oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen (ortholog); retinoic acid 4-hydroxylase activity (ortholog); retinoic acid binding (ortholog); INVOLVED IN bone morphogenesis (ortholog); cell fate determination (ortholog); cellular response to retinoic acid (ortholog); PARTICIPATES IN retinoic acid metabolic pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); congenital disorder of glycosylation type IIb (ortholog); Craniosynostosis Syndrome, Autosomal Recessive (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542413,336,189 - 13,355,423 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542413,336,189 - 13,355,368 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC102023166
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542413,336,189 - 13,355,423 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542413,336,189 - 13,355,368 (+)NCBIChiLan1.0ChiLan1.0
CYP26B1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38272,129,238 - 72,147,862 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl272,129,238 - 72,147,862 (-)EnsemblGRCh38hg38GRCh38
GRCh37272,356,367 - 72,374,991 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36272,209,875 - 72,228,471 (-)NCBINCBI36Build 36hg18NCBI36
Build 34272,268,021 - 72,286,618NCBI
Celera272,206,377 - 72,224,974 (-)NCBICelera
Cytogenetic Map2p13.2NCBI
HuRef272,092,551 - 72,111,176 (-)NCBIHuRef
CHM1_1272,285,791 - 72,304,416 (-)NCBICHM1_1
T2T-CHM13v2.0272,142,327 - 72,160,951 (-)NCBIT2T-CHM13v2.0
Cyp26b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39684,548,396 - 84,570,890 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl684,548,396 - 84,570,890 (-)EnsemblGRCm39 Ensembl
GRCm38684,571,414 - 84,593,908 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl684,571,414 - 84,593,908 (-)EnsemblGRCm38mm10GRCm38
MGSCv37684,521,408 - 84,543,902 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36684,537,602 - 84,559,404 (-)NCBIMGSCv36mm8
Celera686,552,442 - 86,574,953 (-)NCBICelera
Cytogenetic Map6C3NCBI
cM Map636.45NCBI
Cyp26b1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84118,599,356 - 118,616,176 (-)NCBIGRCr8
mRatBN7.24117,041,808 - 117,058,628 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4117,041,808 - 117,058,628 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4122,523,010 - 122,539,827 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04118,298,178 - 118,314,997 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04116,911,101 - 116,927,919 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04116,261,796 - 116,278,615 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4116,261,796 - 116,278,615 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04180,848,037 - 180,865,444 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44118,734,786 - 118,751,606 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14118,979,266 - 118,996,087 (-)NCBI
Celera4106,028,365 - 106,045,185 (-)NCBICelera
Cytogenetic Map4q34NCBI
CYP26B1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21254,241,428 - 54,260,740 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A54,244,188 - 54,263,488 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A72,172,658 - 72,191,410 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A73,667,847 - 73,686,433 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A73,670,830 - 73,686,433 (-)Ensemblpanpan1.1panPan2
CYP26B1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11750,633,397 - 50,653,882 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1750,633,413 - 50,653,894 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1750,280,509 - 50,301,422 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01751,501,857 - 51,522,773 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1751,503,195 - 51,522,777 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11750,510,776 - 50,531,647 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01750,576,538 - 50,597,422 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01751,150,622 - 51,171,524 (+)NCBIUU_Cfam_GSD_1.0
LOC101975674
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629212,541,815 - 12,561,209 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649116,010,070 - 16,028,895 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649116,010,394 - 16,028,852 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYP26B1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl370,572,197 - 70,593,408 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1370,573,551 - 70,593,416 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2373,914,357 - 73,934,214 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CYP26B1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11435,030,011 - 35,057,164 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1435,038,654 - 35,057,176 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604577,009,329 - 77,029,165 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101714280
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247621,456,440 - 1,472,381 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247621,455,828 - 1,474,201 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000013557   ⟹   ENSCLAP00000013404
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542413,336,189 - 13,355,423 (+)Ensembl
RefSeq Acc Id: XM_005385584   ⟹   XP_005385641
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542413,336,189 - 13,355,368 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005385641 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000013404
  ENSCLAP00000013404.1
RefSeq Acc Id: XP_005385641   ⟸   XM_005385584
- UniProtKB: A0A8C2VC57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000013404   ⟸   ENSCLAT00000013557


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009262 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000013557 ENTREZGENE
  ENSCLAT00000013557.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.630.10 UniProtKB/TrEMBL
InterPro Cyt_P450 UniProtKB/TrEMBL
  Cyt_P450_CS UniProtKB/TrEMBL
  Cyt_P450_E_grp-IV UniProtKB/TrEMBL
  Cyt_P450_sf UniProtKB/TrEMBL
NCBI Gene LOC102023166 ENTREZGENE
PANTHER CYTOCHROME P450 26 UniProtKB/TrEMBL
  CYTOCHROME P450 26B1 UniProtKB/TrEMBL
Pfam p450 UniProtKB/TrEMBL
PRINTS EP450IV UniProtKB/TrEMBL
  P450 UniProtKB/TrEMBL
PROSITE CYTOCHROME_P450 UniProtKB/TrEMBL
Superfamily-SCOP SSF48264 UniProtKB/TrEMBL
UniProt A0A8C2VC57 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 LOC102023166  cytochrome P450 26B1    cytochrome P450 26B1-like  Symbol and/or name change 5135510 APPROVED