Cad (carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase) - Rat Genome Database

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Gene: Cad (carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase) Chinchilla lanigera
Analyze
Symbol: Cad
Name: carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
RGD ID: 8934261
Description: ENCODES a protein that exhibits aspartate carbamoyltransferase activity (ortholog); carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity (ortholog); dihydroorotase activity (ortholog); INVOLVED IN 'de novo' pyrimidine nucleobase biosynthetic process (ortholog); 'de novo' UMP biosynthetic process (ortholog); animal organ regeneration (ortholog); PARTICIPATES IN 2-hydroxyglutaric aciduria pathway; beta-ureidopropionase deficiency pathway; Canavan disease pathway; ASSOCIATED WITH beta thalassemia (ortholog); Colonic Neoplasms (ortholog); congenital hypoplastic anemia (ortholog); FOUND IN cell projection (ortholog); cytosol (ortholog); neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554699,203,434 - 9,227,865 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554699,203,433 - 9,227,526 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cad
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554699,203,434 - 9,227,865 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554699,203,433 - 9,227,526 (+)NCBIChiLan1.0ChiLan1.0
CAD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38227,217,369 - 27,243,943 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl227,217,369 - 27,243,943 (+)EnsemblGRCh38hg38GRCh38
GRCh37227,440,237 - 27,466,811 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36227,293,762 - 27,320,158 (+)NCBINCBI36Build 36hg18NCBI36
Build 34227,351,908 - 27,378,305NCBI
Celera227,286,585 - 27,312,981 (+)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef227,181,964 - 27,208,360 (+)NCBIHuRef
CHM1_1227,370,163 - 27,396,559 (+)NCBICHM1_1
T2T-CHM13v2.0227,259,008 - 27,285,579 (+)NCBIT2T-CHM13v2.0
Cad
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39531,211,964 - 31,235,823 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl531,212,124 - 31,235,823 (+)EnsemblGRCm39 Ensembl
GRCm38531,054,620 - 31,078,479 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl531,054,780 - 31,078,479 (+)EnsemblGRCm38mm10GRCm38
MGSCv37531,357,184 - 31,380,852 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36531,331,392 - 31,355,060 (+)NCBIMGSCv36mm8
Celera528,526,834 - 28,551,927 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map516.95NCBI
Cad
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8631,012,091 - 31,035,098 (-)NCBIGRCr8
mRatBN7.2625,292,133 - 25,315,078 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl625,292,133 - 25,319,861 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx625,592,847 - 25,615,794 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0625,908,706 - 25,931,663 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0625,387,772 - 25,410,661 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0626,657,507 - 26,680,459 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl626,657,780 - 26,680,284 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0636,472,498 - 36,495,450 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4625,272,416 - 25,296,266 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera624,783,039 - 24,805,943 (-)NCBICelera
Cytogenetic Map6q14NCBI
CAD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21299,269,360 - 99,295,801 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A99,273,328 - 99,299,769 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A27,218,699 - 27,245,156 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A27,306,488 - 27,332,804 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A27,306,527 - 27,332,804 (+)Ensemblpanpan1.1panPan2
CAD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11721,198,839 - 21,221,897 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1721,197,826 - 21,221,635 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1721,090,639 - 21,113,701 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01721,519,811 - 21,542,872 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1721,514,893 - 21,542,872 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11721,206,567 - 21,229,628 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01721,217,636 - 21,240,698 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01721,264,518 - 21,287,583 (+)NCBIUU_Cfam_GSD_1.0
Cad
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629265,506,657 - 65,529,337 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364935,310,228 - 5,332,918 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364935,308,268 - 5,332,934 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3111,887,020 - 111,914,492 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13111,887,017 - 111,914,511 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CAD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11480,371,154 - 80,399,193 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1480,371,096 - 80,398,914 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604531,756,113 - 31,783,666 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cad
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247389,318,232 - 9,340,925 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247389,318,213 - 9,340,765 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000023436   ⟹   ENSCLAP00000023215
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554699,203,434 - 9,227,526 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000023437   ⟹   ENSCLAP00000023216
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554699,203,434 - 9,227,526 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000023438   ⟹   ENSCLAP00000023217
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554699,203,638 - 9,227,865 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000023439   ⟹   ENSCLAP00000023218
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554699,203,638 - 9,227,271 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000023440   ⟹   ENSCLAP00000023219
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554699,203,638 - 9,227,271 (+)Ensembl
RefSeq Acc Id: XM_005400467   ⟹   XP_005400524
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554699,203,434 - 9,227,526 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005400468   ⟹   XP_005400525
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554699,203,434 - 9,227,526 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005400469   ⟹   XP_005400526
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554699,203,434 - 9,227,526 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005400470   ⟹   XP_005400527
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554699,203,434 - 9,227,526 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013522640   ⟹   XP_013378094
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554699,203,433 - 9,227,526 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005400524   ⟸   XM_005400467
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W7Z1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005400525   ⟸   XM_005400468
- Peptide Label: isoform X3
- UniProtKB: A0A8C2YU00 (UniProtKB/TrEMBL),   A0A8C2W7Z1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005400527   ⟸   XM_005400470
- Peptide Label: isoform X5
- UniProtKB: A0A8C2W7Z1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005400526   ⟸   XM_005400469
- Peptide Label: isoform X4
- UniProtKB: A0A8C2W7Z1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013378094   ⟸   XM_013522640
- Peptide Label: isoform X2
- UniProtKB: A0A8C2W7Z1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000023217   ⟸   ENSCLAT00000023438
RefSeq Acc Id: ENSCLAP00000023218   ⟸   ENSCLAT00000023439
RefSeq Acc Id: ENSCLAP00000023215   ⟸   ENSCLAT00000023436
RefSeq Acc Id: ENSCLAP00000023216   ⟸   ENSCLAT00000023437
RefSeq Acc Id: ENSCLAP00000023219   ⟸   ENSCLAT00000023440
Protein Domains
ATP-grasp   MGS-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015929 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000023436 ENTREZGENE
  ENSCLAT00000023436.1 UniProtKB/TrEMBL
  ENSCLAT00000023437.1 UniProtKB/TrEMBL
  ENSCLAT00000023438 ENTREZGENE
  ENSCLAT00000023438.1 UniProtKB/TrEMBL
  ENSCLAT00000023439.1 UniProtKB/TrEMBL
  ENSCLAT00000023440.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1030.10 UniProtKB/TrEMBL
  3.30.1490.20 UniProtKB/TrEMBL
  3.40.50.1370 UniProtKB/TrEMBL
  3.40.50.1380 UniProtKB/TrEMBL
  3.40.50.20 UniProtKB/TrEMBL
  3.40.50.880 UniProtKB/TrEMBL
  3.50.30.20 UniProtKB/TrEMBL
  ATP-grasp fold, B domain UniProtKB/TrEMBL
  Metal-dependent hydrolases UniProtKB/TrEMBL
InterPro Amidohydro-rel UniProtKB/TrEMBL
  Asp/Orn_carbamoyltranf_P-bd UniProtKB/TrEMBL
  Asp/Orn_carbamoylTrfase UniProtKB/TrEMBL
  Asp/Orn_carbamoylTrfase_sf UniProtKB/TrEMBL
  Asp_carbamoyltransf UniProtKB/TrEMBL
  Asp_carbamoyltransf_Asp/Orn-bd UniProtKB/TrEMBL
  ATP-grasp UniProtKB/TrEMBL
  ATP_grasp_subdomain_1 UniProtKB/TrEMBL
  CarbamoylP_synth_lsu UniProtKB/TrEMBL
  CarbamoylP_synth_lsu_oligo UniProtKB/TrEMBL
  CarbamoylP_synth_lsu_oligo_sf UniProtKB/TrEMBL
  CarbamoylP_synth_ssu UniProtKB/TrEMBL
  CarbamoylP_synth_ssu_N UniProtKB/TrEMBL
  CarbP_synth_ssu_N_sf UniProtKB/TrEMBL
  CbamoylP_synth_lsu-like_ATP-bd UniProtKB/TrEMBL
  CbamoylP_synth_lsu_CPSase_dom UniProtKB/TrEMBL
  Class_I_gatase-like UniProtKB/TrEMBL
  CPSase_GATase1 UniProtKB/TrEMBL
  Dihydroorotase_CS UniProtKB/TrEMBL
  GATASE UniProtKB/TrEMBL
  Metal-dep_hydrolase_composite UniProtKB/TrEMBL
  Metal_Hydrolase UniProtKB/TrEMBL
  MGS-like_dom UniProtKB/TrEMBL
  MGS-like_dom_sf UniProtKB/TrEMBL
  PreATP-grasp_dom_sf UniProtKB/TrEMBL
NCBI Gene Cad ENTREZGENE
PANTHER ASPARTATE CARBAMOYLTRANSFERASE, CHLOROPLASTIC UniProtKB/TrEMBL
  CAD PROTEIN UniProtKB/TrEMBL
  CARBAMOYLTRANSFERASE FAMILY MEMBER UniProtKB/TrEMBL
Pfam Amidohydro_1 UniProtKB/TrEMBL
  CPSase_L_D2 UniProtKB/TrEMBL
  CPSase_L_D3 UniProtKB/TrEMBL
  CPSase_sm_chain UniProtKB/TrEMBL
  GATase UniProtKB/TrEMBL
  MGS UniProtKB/TrEMBL
  OTCace UniProtKB/TrEMBL
  OTCace_N UniProtKB/TrEMBL
PRINTS AOTCASE UniProtKB/TrEMBL
  ATCASE UniProtKB/TrEMBL
  CPSASE UniProtKB/TrEMBL
  CPSGATASE UniProtKB/TrEMBL
PROSITE ATP_GRASP UniProtKB/TrEMBL
  CARBAMOYLTRANSFERASE UniProtKB/TrEMBL
  CPSASE_1 UniProtKB/TrEMBL
  CPSASE_2 UniProtKB/TrEMBL
  DIHYDROOROTASE_1 UniProtKB/TrEMBL
  DIHYDROOROTASE_2 UniProtKB/TrEMBL
  GATASE_TYPE_1 UniProtKB/TrEMBL
  MGS UniProtKB/TrEMBL
SMART CPSase_L_D3 UniProtKB/TrEMBL
  CPSase_sm_chain UniProtKB/TrEMBL
  MGS UniProtKB/TrEMBL
Superfamily-SCOP Glutathione synthetase ATP-binding domain-like UniProtKB/TrEMBL
  SSF48108 UniProtKB/TrEMBL
  SSF51338 UniProtKB/TrEMBL
  SSF51556 UniProtKB/TrEMBL
  SSF52021 UniProtKB/TrEMBL
  SSF52317 UniProtKB/TrEMBL
  SSF52335 UniProtKB/TrEMBL
  SSF52440 UniProtKB/TrEMBL
  SSF53671 UniProtKB/TrEMBL
UniProt A0A8C2W060_CHILA UniProtKB/TrEMBL
  A0A8C2W2C7_CHILA UniProtKB/TrEMBL
  A0A8C2W4T7_CHILA UniProtKB/TrEMBL
  A0A8C2W7Z1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YU00 ENTREZGENE, UniProtKB/TrEMBL