Shc1 (SHC adaptor protein 1) - Rat Genome Database

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Gene: Shc1 (SHC adaptor protein 1) Chinchilla lanigera
Analyze
Symbol: Shc1
Name: SHC adaptor protein 1
RGD ID: 8929512
Description: ENCODES a protein that exhibits ephrin receptor binding (ortholog); epidermal growth factor binding (ortholog); epidermal growth factor receptor binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); angiogenesis (ortholog); animal organ regeneration (ortholog); PARTICIPATES IN brain-derived neurotrophic factor signaling pathway; epidermal growth factor/neuregulin signaling pathway; erythropoietin signaling pathway; ASSOCIATED WITH Albuminuria (ortholog); Alzheimer's disease (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); FOUND IN endosome membrane (ortholog); plasma membrane (ortholog); Shc-EGFR complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SHC (Src homology 2 domain containing) transforming protein 1; SHC-transforming protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555451,468,391 - 1,476,814 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555451,468,391 - 1,479,209 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Shc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555451,468,391 - 1,476,814 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555451,468,391 - 1,479,209 (-)NCBIChiLan1.0ChiLan1.0
SHC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381154,962,298 - 154,974,376 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1154,962,298 - 154,974,395 (-)EnsemblGRCh38hg38GRCh38
GRCh371154,934,774 - 154,946,852 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361153,201,398 - 153,213,464 (-)NCBINCBI36Build 36hg18NCBI36
Build 341151,749,351 - 151,756,075NCBI
Celera1128,005,799 - 128,017,984 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1126,296,519 - 126,308,704 (-)NCBIHuRef
CHM1_11156,331,148 - 156,343,332 (-)NCBICHM1_1
T2T-CHM13v2.01154,101,659 - 154,113,737 (-)NCBIT2T-CHM13v2.0
Shc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39389,325,858 - 89,337,336 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl389,325,750 - 89,337,334 (+)EnsemblGRCm39 Ensembl
GRCm38389,418,551 - 89,430,029 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl389,418,443 - 89,430,027 (+)EnsemblGRCm38mm10GRCm38
MGSCv37389,222,473 - 89,233,951 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36389,504,530 - 89,515,942 (+)NCBIMGSCv36mm8
Celera389,453,612 - 89,465,090 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.11NCBI
Shc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82177,135,649 - 177,147,257 (+)NCBIGRCr8
mRatBN7.22174,837,937 - 174,849,538 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2174,837,930 - 174,849,536 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2181,983,489 - 181,995,027 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02180,005,866 - 180,017,410 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02174,606,456 - 174,618,004 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02188,745,503 - 188,757,066 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2188,745,503 - 188,757,066 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02208,159,786 - 208,171,348 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42181,616,581 - 181,628,144 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12181,570,194 - 181,572,439 (+)NCBI
Celera2168,778,680 - 168,790,241 (+)NCBICelera
Cytogenetic Map2q34NCBI
SHC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2194,865,885 - 94,878,208 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,598,084 - 94,610,336 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01130,310,778 - 130,323,001 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11133,920,532 - 133,932,730 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1133,920,532 - 133,929,008 (-)Ensemblpanpan1.1panPan2
SHC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1742,501,829 - 42,509,613 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl742,500,185 - 42,508,276 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha741,992,601 - 42,000,693 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0742,371,672 - 42,379,764 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl742,370,281 - 42,379,765 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1742,151,365 - 42,159,456 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0742,204,970 - 42,213,062 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0742,488,555 - 42,496,647 (+)NCBIUU_Cfam_GSD_1.0
Shc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505825,481,178 - 25,491,621 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365804,512,680 - 4,519,715 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365804,511,560 - 4,522,003 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SHC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl494,810,875 - 94,831,765 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1494,818,226 - 94,831,766 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24103,576,217 - 103,588,162 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SHC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1208,854,189 - 8,866,406 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl208,858,458 - 8,866,610 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660388,189,413 - 8,201,613 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Shc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248852,511,240 - 2,521,155 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248852,511,039 - 2,520,883 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000007251   ⟹   ENSCLAP00000007139
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555451,468,391 - 1,476,814 (-)Ensembl
RefSeq Acc Id: XM_005411532   ⟹   XP_005411589
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555451,468,391 - 1,476,814 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005411534   ⟹   XP_005411591
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555451,468,391 - 1,479,209 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005411589 (Get FASTA)   NCBI Sequence Viewer  
  XP_005411591 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000007139
  ENSCLAP00000007139.1
RefSeq Acc Id: XP_005411591   ⟸   XM_005411534
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005411589   ⟸   XM_005411532
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YLC6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000007139   ⟸   ENSCLAT00000007251
Protein Domains
PID   SH2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005022 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000007251 ENTREZGENE
  ENSCLAT00000007251.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
  3.30.505.10 UniProtKB/TrEMBL
InterPro PH-like_dom_sf UniProtKB/TrEMBL
  PID_Shc-like UniProtKB/TrEMBL
  PTB/PI_dom UniProtKB/TrEMBL
  SH2 UniProtKB/TrEMBL
  SH2_dom_sf UniProtKB/TrEMBL
  SHC_SH2 UniProtKB/TrEMBL
NCBI Gene Shc1 ENTREZGENE
PANTHER PTHR10337:SF2 UniProtKB/TrEMBL
  SHC TRANSFORMING PROTEIN UniProtKB/TrEMBL
Pfam PID UniProtKB/TrEMBL
  SH2 UniProtKB/TrEMBL
PRINTS SH2DOMAIN UniProtKB/TrEMBL
  SHCPIDOMAIN UniProtKB/TrEMBL
PROSITE PID UniProtKB/TrEMBL
  SH2 UniProtKB/TrEMBL
SMART PTB UniProtKB/TrEMBL
  SH2 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF55550 UniProtKB/TrEMBL
UniProt A0A8C2YLC6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Shc1  SHC adaptor protein 1    SHC (Src homology 2 domain containing) transforming protein 1  Symbol and/or name change 5135510 APPROVED