Robo1 (roundabout guidance receptor 1) - Rat Genome Database

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Gene: Robo1 (roundabout guidance receptor 1) Chinchilla lanigera
Analyze
Symbol: Robo1
Name: roundabout guidance receptor 1
RGD ID: 8928291
Description: ENCODES a protein that exhibits axon guidance receptor activity (ortholog); identical protein binding (ortholog); LRR domain binding (ortholog); INVOLVED IN aorta development (ortholog); aortic valve morphogenesis (ortholog); axon guidance (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); atrial fibrillation (ortholog); autistic disorder (ortholog); FOUND IN axolemma (ortholog); axon (ortholog); cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: roundabout homolog 1; roundabout, axon guidance receptor, homolog 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540713,107,235 - 13,487,053 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540712,593,911 - 13,485,723 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
aorta development  (ISO)
aortic valve morphogenesis  (ISO)
axon guidance  (ISO)
axon midline choice point recognition  (ISO)
cell migration involved in sprouting angiogenesis  (ISO)
cellular response to hypoxia  (ISO)
chemorepulsion involved in postnatal olfactory bulb interneuron migration  (ISO)
coronary vasculature development  (ISO)
endocardial cushion formation  (ISO)
heart development  (ISO)
heart induction  (ISO)
homophilic cell adhesion via plasma membrane adhesion molecules  (ISO)
kidney development  (ISO)
mammary duct terminal end bud growth  (ISO)
negative regulation of cell migration  (ISO)
negative regulation of cell population proliferation  (ISO)
negative regulation of chemokine-mediated signaling pathway  (ISO)
negative regulation of gene expression  (ISO)
negative regulation of mammary gland epithelial cell proliferation  (ISO)
negative regulation of negative chemotaxis  (ISO)
negative regulation of synapse assembly  (ISO)
neuron projection extension  (ISO)
olfactory bulb interneuron development  (ISO)
oligodendrocyte development  (ISO)
outflow tract septum morphogenesis  (ISO)
positive regulation of axonogenesis  (ISO)
positive regulation of gene expression  (ISO)
positive regulation of Notch signaling pathway  (ISO)
positive regulation of Rho protein signal transduction  (ISO)
positive regulation of vascular endothelial growth factor receptor signaling pathway  (ISO)
positive regulation of vascular endothelial growth factor signaling pathway  (ISO)
pulmonary valve morphogenesis  (ISO)
regulation of dendrite morphogenesis  (ISO)
Roundabout signaling pathway  (ISO)
spinal cord development  (ISO)
ventricular septum development  (ISO)
ventricular septum morphogenesis  (ISO)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Robo1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540713,107,235 - 13,487,053 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540712,593,911 - 13,485,723 (+)NCBIChiLan1.0ChiLan1.0
ROBO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38378,597,239 - 79,767,998 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl378,597,239 - 79,767,998 (-)EnsemblGRCh38hg38GRCh38
GRCh37378,646,389 - 79,817,148 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36378,729,080 - 79,721,751 (-)NCBINCBI36Build 36hg18NCBI36
Build 34378,729,079 - 79,721,751NCBI
Celera379,390,331 - 80,561,510 (-)NCBICelera
Cytogenetic Map3p12.3NCBI
HuRef378,666,127 - 79,837,569 (-)NCBIHuRef
CHM1_1378,599,244 - 79,770,223 (-)NCBICHM1_1
T2T-CHM13v2.0378,652,524 - 79,823,991 (-)NCBIT2T-CHM13v2.0
Robo1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391671,824,406 - 72,844,379 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1672,105,194 - 72,842,983 (+)EnsemblGRCm39 Ensembl
GRCm381672,027,518 - 73,047,491 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1672,308,306 - 73,046,095 (+)EnsemblGRCm38mm10GRCm38
MGSCv371672,663,394 - 73,046,345 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361672,546,574 - 72,928,773 (+)NCBIMGSCv36mm8
Celera1672,912,535 - 73,307,241 (+)NCBICelera
Cytogenetic Map16C3.1NCBI
cM Map1641.08NCBI
Robo1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81124,067,869 - 25,108,694 (+)NCBIGRCr8
mRatBN7.21110,580,863 - 11,621,675 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1110,580,908 - 11,620,203 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1119,201,886 - 20,247,920 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01111,929,017 - 12,975,115 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01111,103,305 - 12,145,678 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0119,079,291 - 10,146,302 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl119,642,365 - 10,143,317 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01113,314,508 - 13,808,775 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41110,784,947 - 11,720,646 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11110,784,946 - 11,720,646 (+)NCBI
Celera1110,598,877 - 11,659,942 (+)NCBICelera
Cytogenetic Map11p11NCBI
ROBO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2278,737,606 - 79,904,842 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1378,741,123 - 79,909,631 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0378,707,802 - 79,876,519 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1380,579,716 - 81,001,219 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl380,581,388 - 81,569,308 (-)Ensemblpanpan1.1panPan2
ROBO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1318,082,363 - 8,594,623 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl317,626,126 - 8,593,728 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha317,536,253 - 8,593,279 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0317,481,760 - 8,614,235 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl317,640,944 - 8,614,236 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1317,442,809 - 8,564,392 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0317,499,515 - 8,626,174 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0317,883,361 - 9,008,850 (+)NCBIUU_Cfam_GSD_1.0
Robo1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049718,782,876 - 9,791,545 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365054,330,303 - 4,709,655 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365054,329,428 - 4,711,310 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ROBO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13175,348,410 - 176,479,481 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113175,348,223 - 176,479,482 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213186,417,282 - 186,884,529 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ROBO1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12297,178,093 - 98,363,647 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2298,222,891 - 98,363,219 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604168,583,685 - 69,736,220 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Robo1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248744,949,538 - 5,357,690 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248744,234,640 - 5,359,333 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013503701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013503704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013503707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013503711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013503716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01007135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01007136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01007137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01007138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01007139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01007140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01007141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01007142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01007143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01007144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01007145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01007146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01007147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01007148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01007149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01007150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBCE01179506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCLAT00000022772   ⟹   ENSCLAP00000022564
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540713,107,235 - 13,487,053 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000022773   ⟹   ENSCLAP00000022565
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540713,107,716 - 13,484,011 (+)Ensembl
RefSeq Acc Id: XM_013503701   ⟹   XP_013359155
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540712,593,911 - 13,485,723 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013503704   ⟹   XP_013359158
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540712,593,911 - 13,485,723 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013503707   ⟹   XP_013359161
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540713,149,543 - 13,485,723 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013503711   ⟹   XP_013359165
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540712,593,911 - 13,485,723 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013503716   ⟹   XP_013359170
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540712,593,911 - 13,485,723 (+)NCBI
Sequence:
RefSeq Acc Id: XP_013359155   ⟸   XM_013503701
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VYK8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013359165   ⟸   XM_013503711
- Peptide Label: isoform X4
- UniProtKB: A0A8C2VYK8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013359158   ⟸   XM_013503704
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VYK8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013359170   ⟸   XM_013503716
- Peptide Label: isoform X5
- UniProtKB: A0A8C2VYK8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013359161   ⟸   XM_013503707
- Peptide Label: isoform X3
- UniProtKB: A0A8C2VYK8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000022565   ⟸   ENSCLAT00000022773
RefSeq Acc Id: ENSCLAP00000022564   ⟸   ENSCLAT00000022772
Protein Domains
Fibronectin type-III   Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015477 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000022772 ENTREZGENE
  ENSCLAT00000022772.1 UniProtKB/TrEMBL
  ENSCLAT00000022773.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  Robo1 UniProtKB/TrEMBL
NCBI Gene Robo1 ENTREZGENE
PANTHER CONTACTIN 5 UniProtKB/TrEMBL
  MYOTILIN UniProtKB/TrEMBL
  PROTEIN SIDEKICK UniProtKB/TrEMBL
  ROUNDABOUT HOMOLOG 2 UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
UniProt A0A8C2VYK8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VZ23_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Robo1  roundabout guidance receptor 1    roundabout, axon guidance receptor, homolog 1 (Drosophila)  Symbol and/or name change 5135510 APPROVED