Orc3 (origin recognition complex subunit 3) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Orc3 (origin recognition complex subunit 3) Chinchilla lanigera
Analyze
Symbol: Orc3
Name: origin recognition complex subunit 3
RGD ID: 8910050
Description: INVOLVED IN DNA replication initiation (ortholog); glial cell proliferation (ortholog); neural precursor cell proliferation (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN chromatin (ortholog); nuclear body (ortholog); nuclear origin of replication recognition complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: origin recognition complex, subunit 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541114,528,043 - 14,595,616 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541114,527,987 - 14,595,216 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Orc3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541114,528,043 - 14,595,616 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541114,527,987 - 14,595,216 (+)NCBIChiLan1.0ChiLan1.0
ORC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38687,590,135 - 87,677,823 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl687,590,067 - 87,667,453 (+)EnsemblGRCh38hg38GRCh38
GRCh37688,299,853 - 88,377,169 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36688,356,562 - 88,433,888 (+)NCBINCBI36Build 36hg18NCBI36
Build 34688,356,561 - 88,433,885NCBI
Celera688,718,203 - 88,795,190 (+)NCBICelera
Cytogenetic Map6q15NCBI
HuRef685,515,390 - 85,592,365 (+)NCBIHuRef
CHM1_1688,397,143 - 88,474,506 (+)NCBICHM1_1
T2T-CHM13v2.0688,798,431 - 88,886,160 (+)NCBIT2T-CHM13v2.0
Orc3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39434,566,781 - 34,614,942 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl434,570,796 - 34,614,944 (-)EnsemblGRCm39 Ensembl
GRCm38434,566,781 - 34,614,963 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl434,570,796 - 34,614,944 (-)EnsemblGRCm38mm10GRCm38
MGSCv37434,514,030 - 34,562,191 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36434,758,190 - 34,803,831 (-)NCBIMGSCv36mm8
Celera434,296,360 - 34,344,495 (-)NCBICelera
Cytogenetic Map4A5NCBI
cM Map416.81NCBI
Orc3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8553,923,264 - 53,977,869 (-)NCBIGRCr8
mRatBN7.2549,123,758 - 49,181,552 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl549,126,955 - 49,181,633 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx551,320,134 - 51,374,803 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0552,920,367 - 52,975,034 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0552,826,274 - 52,880,639 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0550,019,159 - 50,075,533 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl550,020,815 - 50,075,454 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0554,588,113 - 54,644,440 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4551,172,243 - 51,226,644 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1551,172,422 - 51,226,823 (-)NCBI
Celera547,877,684 - 47,931,950 (-)NCBICelera
Cytogenetic Map5q21NCBI
ORC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25107,671,472 - 107,757,550 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16105,565,286 - 105,651,326 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0685,466,928 - 85,552,619 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1688,741,362 - 88,816,434 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl688,741,362 - 88,829,801 (+)Ensemblpanpan1.1panPan2
ORC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11247,047,341 - 47,108,126 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1247,047,195 - 47,108,117 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1246,855,302 - 46,915,592 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01247,853,551 - 47,913,880 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1247,853,396 - 47,913,878 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11247,145,146 - 47,206,401 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01247,072,621 - 47,133,465 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01247,261,944 - 47,323,195 (+)NCBIUU_Cfam_GSD_1.0
Orc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494682,189,035 - 82,256,122 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365104,225,697 - 4,282,190 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365104,222,036 - 4,281,800 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ORC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl155,954,159 - 56,042,853 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1155,982,132 - 56,044,244 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2162,784,200 - 62,787,566 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ORC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11312,068,167 - 12,159,079 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1312,068,235 - 12,159,401 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040188,322,311 - 188,395,205 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Orc3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247996,649,634 - 6,729,604 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247996,649,034 - 6,728,933 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000019864   ⟹   ENSCLAP00000019671
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541114,528,043 - 14,595,616 (+)Ensembl
RefSeq Acc Id: XM_005377732   ⟹   XP_005377789
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541114,527,987 - 14,595,216 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005377734   ⟹   XP_005377791
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541114,528,029 - 14,595,216 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005377789 (Get FASTA)   NCBI Sequence Viewer  
  XP_005377791 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000019671
  ENSCLAP00000019671.1
RefSeq Acc Id: XP_005377789   ⟸   XM_005377732
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VRR0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005377791   ⟸   XM_005377734
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000019671   ⟸   ENSCLAT00000019864

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013496 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000019864 ENTREZGENE
  ENSCLAT00000019864.1 UniProtKB/TrEMBL
InterPro ORC3 UniProtKB/TrEMBL
  ORC3_ins UniProtKB/TrEMBL
  ORC3_N UniProtKB/TrEMBL
  ORC_WH_C UniProtKB/TrEMBL
NCBI Gene Orc3 ENTREZGENE
PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 3 UniProtKB/TrEMBL
  PTHR12748 UniProtKB/TrEMBL
Pfam ORC3_ins UniProtKB/TrEMBL
  ORC3_N UniProtKB/TrEMBL
  ORC_WH_C UniProtKB/TrEMBL
UniProt A0A8C2VRR0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Orc3  origin recognition complex subunit 3    origin recognition complex, subunit 3  Symbol and/or name change 5135510 APPROVED