Cd247 (CD247 molecule) - Rat Genome Database

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Gene: Cd247 (CD247 molecule) Chinchilla lanigera
Analyze
Symbol: Cd247
Name: CD247 molecule
RGD ID: 8909240
Description: ENCODES a protein that exhibits identical protein binding (ortholog); protein heterodimerization activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cell surface receptor signaling pathway (ortholog); Fc-gamma receptor signaling pathway (ortholog); positive regulation of protein localization to cell surface (ortholog); PARTICIPATES IN interleukin-12 signaling pathway; ASSOCIATED WITH COVID-19 (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN alpha-beta T cell receptor complex (ortholog); cytoplasm (ortholog); Fc-gamma receptor III complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: T-cell surface glycoprotein CD3 zeta chain
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554629,469,255 - 9,538,882 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554629,466,706 - 9,539,897 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Cd247
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554629,469,255 - 9,538,882 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554629,466,706 - 9,539,897 (+)NCBIChiLan1.0ChiLan1.0
CD247
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381167,430,640 - 167,518,529 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1167,425,027 - 167,518,640 (-)EnsemblGRCh38hg38GRCh38
GRCh371167,399,877 - 167,487,766 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,666,505 - 165,754,450 (-)NCBINCBI36Build 36hg18NCBI36
Build 341164,131,542 - 164,219,484NCBI
Celera1140,509,330 - 140,597,130 (-)NCBICelera
Cytogenetic Map1q24.2NCBI
HuRef1138,645,985 - 138,733,880 (-)NCBIHuRef
CHM1_11168,822,340 - 168,910,166 (-)NCBICHM1_1
T2T-CHM13v2.01166,781,991 - 166,869,980 (-)NCBIT2T-CHM13v2.0
Cd247
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391165,607,514 - 165,698,722 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1165,616,250 - 165,704,846 (+)EnsemblGRCm39 Ensembl
GRCm381165,779,952 - 165,871,153 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1165,788,681 - 165,877,277 (+)EnsemblGRCm38mm10GRCm38
MGSCv371167,718,820 - 167,804,117 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361167,625,398 - 167,704,109 (+)NCBIMGSCv36mm8
Celera1168,233,349 - 168,319,834 (+)NCBICelera
Cytogenetic Map1H2.3NCBI
cM Map173.14NCBI
Cd247
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81380,576,264 - 80,651,422 (+)NCBIGRCr8
mRatBN7.21378,043,302 - 78,118,437 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1378,043,307 - 78,122,263 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1380,661,216 - 80,736,398 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01381,965,153 - 82,040,261 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01379,212,301 - 79,287,410 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01383,996,045 - 84,071,408 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1383,996,080 - 84,071,400 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01388,876,046 - 88,951,003 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41381,515,383 - 81,594,699 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11381,529,570 - 81,608,887 (+)NCBI
Celera1377,754,426 - 77,829,099 (+)NCBICelera
Cytogenetic Map13q23NCBI
CD247
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,244,828 - 82,332,800 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1181,913,361 - 82,001,283 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01142,863,860 - 142,951,851 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11146,648,733 - 146,736,071 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1146,648,733 - 146,736,071 (-)Ensemblpanpan1.1panPan2
CD247
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1730,961,169 - 30,972,143 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha730,436,526 - 30,511,145 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0730,718,692 - 30,793,466 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl730,717,802 - 30,793,463 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1730,557,903 - 30,632,136 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0730,657,066 - 30,664,032 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0730,828,331 - 30,902,528 (+)NCBIUU_Cfam_GSD_1.0
Cd247
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344100,696,707 - 100,758,231 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648118,597,335 - 18,604,097 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648118,544,129 - 18,605,239 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD247
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl483,494,395 - 83,586,647 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1483,494,266 - 83,586,887 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2491,170,039 - 91,260,282 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CD247
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12561,508,256 - 61,596,464 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2561,508,283 - 61,595,414 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605563,232,781 - 63,332,026 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd247
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248265,505,569 - 5,573,783 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248265,504,676 - 5,574,037 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000007851   ⟹   ENSCLAP00000007731
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554629,469,255 - 9,538,882 (+)Ensembl
RefSeq Acc Id: XM_005398233   ⟹   XP_005398290
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554629,466,706 - 9,539,897 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013521423   ⟹   XP_013376877
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554629,466,718 - 9,539,897 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005398290 (Get FASTA)   NCBI Sequence Viewer  
  XP_013376877 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000007731
  ENSCLAP00000007731.1
RefSeq Acc Id: XP_005398290   ⟸   XM_005398233
- UniProtKB: A0A8C2UZQ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013376877   ⟸   XM_013521423
- UniProtKB: A0A8C2UZQ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000007731   ⟸   ENSCLAT00000007851


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005425 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000007851 ENTREZGENE
  ENSCLAT00000007851.1 UniProtKB/TrEMBL
InterPro CD3_zeta/IgE_Fc_rcpt_gamma UniProtKB/TrEMBL
  Phos_immunorcpt_sig_ITAM UniProtKB/TrEMBL
  T-cell_CD3_zeta UniProtKB/TrEMBL
NCBI Gene Cd247 ENTREZGENE
PANTHER PTHR10035 UniProtKB/TrEMBL
  T-CELL SURFACE GLYCOPROTEIN CD3 ZETA CHAIN UniProtKB/TrEMBL
Pfam ITAM UniProtKB/TrEMBL
  TCR_zetazeta UniProtKB/TrEMBL
PROSITE ITAM_1 UniProtKB/TrEMBL
SMART ITAM UniProtKB/TrEMBL
UniProt A0A8C2UZQ6 ENTREZGENE, UniProtKB/TrEMBL