Colq (collagen like tail subunit of asymmetric acetylcholinesterase) - Rat Genome Database

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Gene: Colq (collagen like tail subunit of asymmetric acetylcholinesterase) Chinchilla lanigera
Analyze
Symbol: Colq
Name: collagen like tail subunit of asymmetric acetylcholinesterase
RGD ID: 8900724
Description: ENCODES a protein that exhibits heparin binding (ortholog); INVOLVED IN establishment of protein localization to membrane (ortholog); regulation of synaptic assembly at neuromuscular junction (ortholog); skeletal muscle acetylcholine-gated channel clustering (ortholog); ASSOCIATED WITH 3p deletion syndrome (ortholog); biotinidase deficiency (ortholog); congenital myasthenic syndrome (ortholog); FOUND IN cell junction (ortholog); neuromuscular junction (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: acetylcholinesterase collagenic tail peptide; collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554301,956,375 - 2,019,598 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554301,956,833 - 2,019,581 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Colq
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554301,956,375 - 2,019,598 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554301,956,833 - 2,019,581 (-)NCBIChiLan1.0ChiLan1.0
COLQ
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38315,450,133 - 15,521,706 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl315,450,133 - 15,521,751 (-)EnsemblGRCh38hg38GRCh38
GRCh37315,491,640 - 15,563,213 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36315,466,644 - 15,538,262 (-)NCBINCBI36Build 36hg18NCBI36
Build 34315,466,644 - 15,538,262NCBI
Celera315,429,870 - 15,501,486 (-)NCBICelera
Cytogenetic Map3p25.1NCBI
HuRef315,426,974 - 15,498,632 (-)NCBIHuRef
CHM1_1315,442,518 - 15,514,124 (-)NCBICHM1_1
T2T-CHM13v2.0315,452,540 - 15,524,108 (-)NCBIT2T-CHM13v2.0
Colq
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391431,245,039 - 31,299,820 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1431,245,039 - 31,313,300 (-)EnsemblGRCm39 Ensembl
GRCm381431,523,082 - 31,577,863 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1431,523,082 - 31,591,343 (-)EnsemblGRCm38mm10GRCm38
MGSCv371432,336,270 - 32,390,569 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361430,352,091 - 30,406,392 (-)NCBIMGSCv36mm8
Celera1427,782,091 - 27,835,024 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.18NCBI
Colq
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8166,738,251 - 6,830,492 (-)NCBIGRCr8
mRatBN7.2166,731,850 - 6,824,973 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,731,858 - 6,787,107 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx166,744,228 - 6,799,552 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0167,889,123 - 7,944,453 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0166,751,954 - 6,807,065 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0167,626,380 - 7,681,621 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl167,627,603 - 7,681,576 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0167,553,135 - 7,608,336 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4166,975,587 - 7,035,001 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1166,975,584 - 7,034,999 (-)NCBI
Celera168,403,494 - 8,458,629 (+)NCBICelera
Cytogenetic Map16p16NCBI
COLQ
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2215,430,081 - 15,506,898 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1315,434,653 - 15,511,662 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0315,373,589 - 15,447,613 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1315,712,630 - 15,784,299 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl315,712,630 - 15,784,299 (-)Ensemblpanpan1.1panPan2
Colq
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118169,757,170 - 169,802,383 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364732,877,568 - 2,939,840 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364732,877,543 - 2,941,374 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COLQ
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl132,677,740 - 2,755,307 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1132,677,738 - 2,755,635 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2132,604,003 - 2,681,981 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COLQ
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11560,284,557 - 60,395,745 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604133,316,392 - 33,386,225 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Colq
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248225,163,506 - 5,222,134 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248225,162,989 - 5,222,140 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000007114   ⟹   ENSCLAP00000007002
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554301,956,375 - 2,019,598 (-)Ensembl
RefSeq Acc Id: XM_005387306   ⟹   XP_005387363
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554301,956,833 - 2,019,581 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013515712   ⟹   XP_013371166
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554301,956,833 - 2,019,581 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005387363 (Get FASTA)   NCBI Sequence Viewer  
  XP_013371166 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000007002
  ENSCLAP00000007002.1
Reference Protein Sequences
RefSeq Acc Id: XP_005387363   ⟸   XM_005387306
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UZ92 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013371166   ⟸   XM_013515712
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000007002   ⟸   ENSCLAT00000007114


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004933 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000007114 ENTREZGENE
  ENSCLAT00000007114.1 UniProtKB/TrEMBL
InterPro Collagen UniProtKB/TrEMBL
  Myxo_disulph_rpt UniProtKB/TrEMBL
NCBI Gene Colq ENTREZGENE
PANTHER ACETYLCHOLINESTERASE COLLAGENIC TAIL PEPTIDE UniProtKB/TrEMBL
  COLLAGEN ALPHA UniProtKB/TrEMBL
Pfam Collagen UniProtKB/TrEMBL
UniProt A0A8C2UZ92 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Colq  collagen like tail subunit of asymmetric acetylcholinesterase    collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase  Symbol and/or name change 5135510 APPROVED