Cacna1f (calcium voltage-gated channel subunit alpha1 F) - Rat Genome Database

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Gene: Cacna1f (calcium voltage-gated channel subunit alpha1 F) Chinchilla lanigera
Analyze
Symbol: Cacna1f
Name: calcium voltage-gated channel subunit alpha1 F
RGD ID: 8890431
Description: ENCODES a protein that exhibits high voltage-gated calcium channel activity (ortholog); voltage-gated calcium channel activity (ortholog); INVOLVED IN axonogenesis (ortholog); dendrite morphogenesis (ortholog); detection of light stimulus involved in visual perception (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH Aland Island eye disease (ortholog); autistic disorder (ortholog); cone-rod dystrophy (ortholog); FOUND IN membrane (ortholog); neuronal cell body (ortholog); perikaryon (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calcium channel, voltage-dependent, L type, alpha 1F subunit; voltage-dependent L-type calcium channel subunit alpha-1F
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955543692,035 - 717,364 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955543692,035 - 717,364 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cacna1f
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955543692,035 - 717,364 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955543692,035 - 717,364 (-)NCBIChiLan1.0ChiLan1.0
CACNA1F
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X49,205,063 - 49,233,340 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX49,205,063 - 49,233,371 (-)EnsemblGRCh38hg38GRCh38
GRCh37X49,061,523 - 49,089,802 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X48,948,467 - 48,976,777 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X48,817,894 - 48,846,204NCBI
CeleraX52,574,536 - 52,602,846 (+)NCBICelera
Cytogenetic MapXp11.23NCBI
HuRefX46,718,790 - 46,746,229 (-)NCBIHuRef
CHM1_1X49,093,823 - 49,122,134 (-)NCBICHM1_1
T2T-CHM13v2.0X48,616,922 - 48,645,225 (-)NCBIT2T-CHM13v2.0
Cacna1f
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,473,342 - 7,501,435 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX7,473,322 - 7,501,435 (+)EnsemblGRCm39 Ensembl
GRCm38X7,607,103 - 7,635,196 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,607,083 - 7,635,196 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X7,184,229 - 7,212,322 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X6,759,391 - 6,792,153 (+)NCBIMGSCv36mm8
MGSCv36X3,776,675 - 3,808,487 (+)NCBIMGSCv36mm8
CeleraX3,836,719 - 3,864,582 (-)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.42NCBI
Cacna1f
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X17,539,992 - 17,568,308 (-)NCBIGRCr8
mRatBN7.2X14,868,096 - 14,896,413 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX14,868,024 - 14,896,413 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX19,682,471 - 19,710,726 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X20,372,406 - 20,400,665 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X16,637,551 - 16,665,813 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X15,712,709 - 15,741,135 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX15,712,713 - 15,741,103 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X16,504,174 - 16,532,670 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X26,908,850 - 26,937,165 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X26,962,318 - 26,990,634 (-)NCBI
CeleraX14,951,395 - 14,979,817 (-)NCBICelera
Cytogenetic MapXq12NCBI
CACNA1F
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X50,696,660 - 50,725,391 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X50,700,039 - 50,728,770 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X41,504,804 - 41,533,501 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X49,356,994 - 49,385,678 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX49,356,994 - 49,385,678 (-)Ensemblpanpan1.1panPan2
CACNA1F
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X42,302,971 - 42,327,787 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX42,303,158 - 42,326,774 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX16,681,688 - 16,706,446 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X42,444,658 - 42,469,408 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX42,444,814 - 42,469,408 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X42,428,611 - 42,453,368 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X42,416,270 - 42,440,826 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X42,511,022 - 42,535,780 (-)NCBIUU_Cfam_GSD_1.0
Cacna1f
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X34,838,179 - 34,865,828 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367211,078,650 - 1,106,113 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367211,078,570 - 1,106,153 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNA1F
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX43,251,370 - 43,283,990 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X43,250,449 - 43,284,458 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X48,098,467 - 48,132,377 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CACNA1F
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X46,304,831 - 46,330,562 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607611,865,496 - 11,891,390 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cacna1f
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624893945,436 - 970,431 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624893945,378 - 968,041 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000003949   ⟹   ENSCLAP00000003873
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955543692,035 - 717,364 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000003950   ⟹   ENSCLAP00000003874
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955543692,106 - 717,352 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000003951   ⟹   ENSCLAP00000003875
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955543696,353 - 699,491 (-)Ensembl
RefSeq Acc Id: XM_013508152   ⟹   XP_013363606
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955543692,035 - 717,364 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013363606 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000003873
  ENSCLAP00000003873.1
  ENSCLAP00000003874.1
  ENSCLAP00000003875.1
RefSeq Acc Id: XP_013363606   ⟸   XM_013508152
- UniProtKB: A0A8C2UQZ3 (UniProtKB/TrEMBL),   A0A8C2YJS9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000003873   ⟸   ENSCLAT00000003949
RefSeq Acc Id: ENSCLAP00000003875   ⟸   ENSCLAT00000003951
RefSeq Acc Id: ENSCLAP00000003874   ⟸   ENSCLAT00000003950

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002756 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003949 ENTREZGENE
  ENSCLAT00000003949.1 UniProtKB/TrEMBL
  ENSCLAT00000003950.1 UniProtKB/TrEMBL
  ENSCLAT00000003951.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  1.20.120.350 UniProtKB/TrEMBL
  6.10.250.2180 UniProtKB/TrEMBL
  6.10.250.2500 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro CAC1F_C UniProtKB/TrEMBL
  GPHH_dom UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/TrEMBL
  VDCC_a1su_IQ UniProtKB/TrEMBL
  VDCC_L_a1su UniProtKB/TrEMBL
  VDCCAlpha1 UniProtKB/TrEMBL
  Volt_channel_dom_sf UniProtKB/TrEMBL
NCBI Gene Cacna1f ENTREZGENE
PANTHER VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1 UniProtKB/TrEMBL
  VOLTAGE-DEPENDENT L-TYPE CALCIUM CHANNEL SUBUNIT ALPHA-1F UniProtKB/TrEMBL
Pfam Ca_chan_IQ UniProtKB/TrEMBL
  CAC1F_C UniProtKB/TrEMBL
  GPHH UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
PRINTS CACHANNEL UniProtKB/TrEMBL
  LVDCCALPHA1 UniProtKB/TrEMBL
SMART Ca_chan_IQ UniProtKB/TrEMBL
Superfamily-SCOP Voltage-gated potassium channels UniProtKB/TrEMBL
UniProt A0A8C2UQZ3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YJS9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YJT6_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Cacna1f  calcium voltage-gated channel subunit alpha1 F    calcium channel, voltage-dependent, L type, alpha 1F subunit  Symbol and/or name change 5135510 APPROVED