Kcnip4 (potassium voltage-gated channel interacting protein 4) - Rat Genome Database

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Gene: Kcnip4 (potassium voltage-gated channel interacting protein 4) Chinchilla lanigera
Analyze
Symbol: Kcnip4
Name: potassium voltage-gated channel interacting protein 4
RGD ID: 8887770
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); potassium channel regulator activity (ortholog); INVOLVED IN protein localization to plasma membrane (ortholog); regulation of potassium ion transmembrane transport (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Kv channel interacting protein 4; Kv channel-interacting protein 4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554802,803,482 - 3,909,709 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554802,803,374 - 3,911,081 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Kcnip4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554802,803,482 - 3,909,709 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554802,803,374 - 3,911,081 (+)NCBIChiLan1.0ChiLan1.0
KCNIP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38420,728,606 - 21,948,772 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl420,728,606 - 21,948,772 (-)EnsemblGRCh38hg38GRCh38
GRCh37420,730,229 - 21,950,395 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36420,339,337 - 21,559,472 (-)NCBINCBI36Build 36hg18NCBI36
Build 34420,407,313 - 21,626,643NCBI
Celera421,186,744 - 22,401,039 (-)NCBICelera
Cytogenetic Map4p15.31-p15.2NCBI
HuRef420,078,999 - 21,295,123 (-)NCBIHuRef
CHM1_1420,728,167 - 21,948,303 (-)NCBICHM1_1
T2T-CHM13v2.0420,710,285 - 21,930,631 (-)NCBIT2T-CHM13v2.0
Kcnip4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39548,546,845 - 49,682,464 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl548,546,844 - 49,682,249 (-)EnsemblGRCm39 Ensembl
GRCm38548,389,503 - 49,525,122 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl548,389,502 - 49,524,907 (-)EnsemblGRCm38mm10GRCm38
MGSCv37548,780,742 - 49,280,796 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36548,677,750 - 48,798,008 (-)NCBIMGSCv36mm8
Celera545,791,893 - 46,283,161 (-)NCBICelera
Cytogenetic Map5B3NCBI
cM Map526.26NCBI
Kcnip4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81465,593,297 - 66,743,994 (+)NCBIGRCr8
mRatBN7.21461,380,699 - 62,531,399 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1461,381,076 - 62,530,144 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1465,770,378 - 66,930,014 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01467,084,054 - 68,243,654 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01463,480,767 - 64,640,412 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01465,549,362 - 66,749,181 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1466,598,259 - 66,749,178 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01465,635,533 - 66,780,362 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41466,284,290 - 67,452,628 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11466,286,680 - 67,455,019 (+)NCBI
Celera1460,438,842 - 61,579,354 (+)NCBICelera
Cytogenetic Map14q11NCBI
KCNIP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2320,977,756 - 22,200,949 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1421,174,236 - 21,742,974 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0415,131,693 - 16,354,827 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1420,422,728 - 21,645,890 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl420,422,728 - 21,645,866 (-)Ensemblpanpan1.1panPan2
KCNIP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1388,013,222 - 88,896,093 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl387,771,875 - 88,894,884 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha390,295,878 - 91,355,349 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0388,754,615 - 89,880,267 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl388,754,739 - 89,880,266 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1387,905,396 - 89,026,151 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0387,989,327 - 89,110,352 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0388,367,711 - 89,493,958 (+)NCBIUU_Cfam_GSD_1.0
Kcnip4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528553,266,229 - 54,323,681 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364776,968,085 - 8,028,852 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364776,967,927 - 8,024,539 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCNIP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl815,211,917 - 16,346,786 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1815,211,916 - 16,346,358 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2815,470,139 - 16,695,141 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KCNIP4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12728,350,918 - 29,539,229 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2729,420,010 - 29,541,783 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604774,924,974 - 76,156,301 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kcnip4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475510,271,283 - 11,391,984 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475510,271,131 - 11,392,421 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005402468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005402469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005402470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005402471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005402472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01056622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01056623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01056624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01056625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01056626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01056627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01056628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01056629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01056630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01056631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDJ01368252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000002031   ⟹   ENSCLAP00000001986
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554802,803,482 - 3,909,709 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000002032   ⟹   ENSCLAP00000001987
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554802,803,482 - 3,909,709 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000002033   ⟹   ENSCLAP00000001988
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554803,040,378 - 3,909,709 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000002034   ⟹   ENSCLAP00000001989
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554803,396,466 - 3,909,709 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000002035   ⟹   ENSCLAP00000001990
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554803,695,097 - 3,909,709 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000002036   ⟹   ENSCLAP00000001991
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554803,792,652 - 3,909,709 (+)Ensembl
RefSeq Acc Id: XM_005402468   ⟹   XP_005402525
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554802,803,374 - 3,911,081 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005402469   ⟹   XP_005402526
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554803,695,243 - 3,911,081 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005402470   ⟹   XP_005402527
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554803,396,325 - 3,911,081 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005402471   ⟹   XP_005402528
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554803,040,046 - 3,911,081 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005402472   ⟹   XP_005402529
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554802,803,374 - 3,911,081 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005402525   ⟸   XM_005402468
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UJV3 (UniProtKB/TrEMBL),   A0A8C2ULH1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005402529   ⟸   XM_005402472
- Peptide Label: isoform X5
- UniProtKB: A0A8C2UJX5 (UniProtKB/TrEMBL),   A0A8C2ULH1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005402528   ⟸   XM_005402471
- Peptide Label: isoform X4
- UniProtKB: A0A8C2ULR9 (UniProtKB/TrEMBL),   A0A8C2ULH1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005402527   ⟸   XM_005402470
- Peptide Label: isoform X3
- UniProtKB: A0A8C2YIW6 (UniProtKB/TrEMBL),   A0A8C2ULH1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005402526   ⟸   XM_005402469
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YIX0 (UniProtKB/TrEMBL),   A0A8C2ULH1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000001987   ⟸   ENSCLAT00000002032
RefSeq Acc Id: ENSCLAP00000001986   ⟸   ENSCLAT00000002031
RefSeq Acc Id: ENSCLAP00000001989   ⟸   ENSCLAT00000002034
RefSeq Acc Id: ENSCLAP00000001988   ⟸   ENSCLAT00000002033
RefSeq Acc Id: ENSCLAP00000001991   ⟸   ENSCLAT00000002036
RefSeq Acc Id: ENSCLAP00000001990   ⟸   ENSCLAT00000002035
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001455 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000002031 ENTREZGENE
  ENSCLAT00000002031.1 UniProtKB/TrEMBL
  ENSCLAT00000002032 ENTREZGENE
  ENSCLAT00000002032.1 UniProtKB/TrEMBL
  ENSCLAT00000002033 ENTREZGENE
  ENSCLAT00000002033.1 UniProtKB/TrEMBL
  ENSCLAT00000002034 ENTREZGENE
  ENSCLAT00000002034.1 UniProtKB/TrEMBL
  ENSCLAT00000002035 ENTREZGENE
  ENSCLAT00000002035.1 UniProtKB/TrEMBL
  ENSCLAT00000002036.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  Recoverin UniProtKB/TrEMBL
NCBI Gene Kcnip4 ENTREZGENE
PANTHER KV CHANNEL-INTERACTING PROTEIN 4 UniProtKB/TrEMBL
  PTHR23055 UniProtKB/TrEMBL
Pfam EF-hand_7 UniProtKB/TrEMBL
  EF-hand_8 UniProtKB/TrEMBL
PRINTS RECOVERIN UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A8C2UJV3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UJX5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2ULH1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2ULR9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YIW6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YIX0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Kcnip4  potassium voltage-gated channel interacting protein 4    Kv channel interacting protein 4  Symbol and/or name change 5135510 APPROVED