Clcf1 (cardiotrophin like cytokine factor 1)

Gene: Clcf1 (cardiotrophin like cytokine factor 1) Chinchilla lanigera

Analyze

Symbol:

Clcf1

Name:

cardiotrophin like cytokine factor 1

RGD ID:

8887376

Description:

ENCODES a protein that exhibits ciliary neurotrophic factor receptor binding (ortholog); cytokine activity (ortholog); signaling receptor binding (ortholog); INVOLVED IN B cell differentiation (ortholog); cell surface receptor signaling pathway (ortholog); cell surface receptor signaling pathway via JAK-STAT (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); cold-induced sweating syndrome (ortholog); cold-induced sweating syndrome 2 (ortholog); FOUND IN CNTFR-CLCF1 complex (ortholog); CRLF-CLCF1 complex (ortholog); extracellular region (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

cardiotrophin-like cytokine factor 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	18,097,779 - 18,108,628 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	18,097,779 - 18,108,628 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Aicardi-Goutieres Syndrome 3 (ISO)

cold-induced sweating syndrome (ISO)

cold-induced sweating syndrome 2 (ISO)

COVID-19 (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Recurrent Infections, with Encephalopathy, Hepatic Dysfunction, and Cardiovascular Malformations (ISO)

severe acute respiratory syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

B cell differentiation (ISO)

cell surface receptor signaling pathway (ISO)

cell surface receptor signaling pathway via JAK-STAT (ISO)

negative regulation of neuron apoptotic process (ISO)

positive regulation of astrocyte differentiation (ISO)

positive regulation of B cell proliferation (ISO)

positive regulation of cell population proliferation (ISO)

positive regulation of immunoglobulin production (ISO)

positive regulation of isotype switching to IgE isotypes (ISO)

positive regulation of tyrosine phosphorylation of STAT protein (ISO)

Cellular Component

CNTFR-CLCF1 complex (ISO)

CRLF-CLCF1 complex (ISO)

extracellular region (ISO)

Molecular Function

ciliary neurotrophic factor receptor binding (ISO)

cytokine activity (ISO)

protein binding (ISO)

signaling receptor binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline

Genomics

Comparative Map Data

Clcf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	18,097,779 - 18,108,628 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	18,097,779 - 18,108,628 (+)	NCBI	ChiLan1.0	ChiLan1.0

CLCF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	67,364,168 - 67,374,177 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	67,364,168 - 67,374,177 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	67,131,639 - 67,141,648 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	66,888,215 - 66,897,782 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	11	64,464,792 - 64,474,817 (-)	NCBI		Celera
Cytogenetic Map	11	q13.2	NCBI
HuRef	11	63,460,623 - 63,470,003 (-)	NCBI		HuRef
CHM1_1	11	67,014,667 - 67,024,689 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	67,358,280 - 67,368,294 (-)	NCBI		T2T-CHM13v2.0

Clcf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	4,264,479 - 4,273,548 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	4,264,292 - 4,273,544 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	4,214,238 - 4,223,505 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	4,214,238 - 4,223,490 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	4,214,392 - 4,222,615 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	4,214,392 - 4,222,615 (+)	NCBI		MGSCv36	mm8
Celera	19	4,085,708 - 4,093,967 (+)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	3.91	NCBI

Clcf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	210,937,763 - 210,947,064 (+)	NCBI		GRCr8
mRatBN7.2	1	201,507,763 - 201,517,607 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	201,507,859 - 201,517,605 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	209,860,495 - 209,869,788 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	216,953,772 - 216,963,075 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	209,644,788 - 209,654,091 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	219,468,866 - 219,472,445 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	219,468,675 - 219,472,654 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	226,338,540 - 226,342,119 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	206,802,745 - 206,806,332 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	206,956,450 - 206,958,891 (+)	NCBI
Celera	1	199,058,438 - 199,062,024 (+)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI

CLCF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	68,591,127 - 68,603,962 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	69,633,693 - 69,646,476 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	62,722,611 - 62,734,279 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	66,034,536 - 66,042,114 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

CLCF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	50,084,120 - 50,093,825 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	50,083,915 - 50,102,651 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	48,694,330 - 48,703,972 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	51,006,050 - 51,015,704 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	51,005,827 - 51,042,712 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	50,219,381 - 50,229,016 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	49,793,861 - 49,803,526 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	50,588,401 - 50,598,037 (+)	NCBI		UU_Cfam_GSD_1.0

Clcf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	5,925,942 - 5,933,973 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936599	2,372,031 - 2,376,939 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936599	2,372,889 - 2,376,316 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CLCF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	5,143,313 - 5,152,692 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	5,142,315 - 5,152,750 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	3,885,547 - 3,891,642 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CLCF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	6,890,751 - 6,900,370 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666038	104,175,044 - 104,185,704 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Clcf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	19,142,852 - 19,153,155 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	19,142,927 - 19,152,572 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005384338	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005384339	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01022937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDJ01016548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000024144 ⟹ ENSCLAP00000023917

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955422	18,097,779 - 18,108,628 (+)	Ensembl

RefSeq Acc Id:

XM_005384338 ⟹ XP_005384395

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955422	18,097,779 - 18,108,628 (+)	NCBI

Sequence:

show sequence

CTTATTACCGAATGATTTACTTGGTGGAATGCTTCTAGGGTATCCAAGACTTGGGGACCAAAGG
ACCATCCCGTAGCAAAATCACAAAATGGGGCTGTCTACAAGCCCCAGATGACAGCTGTTTCCTC
TGCACTCGCTTACTTTCCCTGGCAGCTCTTTAGAGAGGGAGGAAGGAGACCCTCCAGGGAGGGT
CTAGGCTTATGGGTCCCCTAAGTCTCCGCCCAGCAAGTCCCAACCCAGGCCAAAGAGGAGGAAG
GAGGGAGAGCGCTCCACAGCCAAACCACCCCTACCTCACCACCGGAAAAACCAACAACCCAAAA
CCCCAAAGGAAGGAGGATGCCAAATGTCTTGATGGGGAAGCATTTCACAAACGGGACTGGATGG
GACGCCGCGTCTGTCCACGGCCTCAAATCTGCGCATTCTCGCTGAGTCACCCGCGATGCCTCTG
GTGTTGAAACTGGTCCGGTGCCTCGTGCTGATTAATGAATTACAAATCCCCCACCCATGTGCAC
TCTCCCTGGTCACCGGGAAGAATGGAGAACCTTGTGAACTTGAGGGAGAAGTTGGGCATTGGGC
CCTGGTGCCTTCTTTCTCCCCCCAGGGGACATTGTGAGCTGGTTAGTCACCTGCCCCAGCCCCT
GGCGCCTCACTTAGCTCTAGCTTTTGGAAATGGGACAAGCAGGGGACAATGGGCAAGGGGGGGC
GGTCAGCCCAGACAAAGGGCAGCAGGAAAAACACCATCACTGGCTCCAAGGCCAGCTCGCTGGC
ATTTGGGAGAATGTGTCATTGCTTTTACTCAAGGGGGAGGGGGAGAGAAGGTTAGAGATGAAAC
AGAGGTAGGGTGGGCCCCGGGATCCCAAACCAGGCAGGAGCTGGGGTCAGGCGTCCCTAGCTGA
CACGGAGGGGGAAGCCCATGGCTTCTTCATCAAGGCTAGCTCCCGACCCTGGCTCTGGGGAGTC
TGCAGACGGACCGATGCCCTCCCTGCCCCCTCCCCCAGGAGGCCCAGGGTGGTACCGTCGCAGC
CTCGCCTCACCTCACCCCCCCCTCAGTGTTGTGGGAGGGAGAGAAGCCCCAGAAGCCCTCCCTT
CCCGCTTCCCCCCTCCTCCCCCCACCCCGGGGAGGGCTGCTACAATTTGTGGTTACAGCTTTAC
ACGTCAGAAAAAAAAAAGTTTGCAGAATGTCCCACACCGAAAAAAAAAAAATCCGAAACCGAGC
GAAAAAAACCTGCGAGTGGGCCTGGCGGATGGGATTATTAAAGCTTCGCCGGAGCCACGGCTCG
CCCTCCCACTCCGCCAGCCTCTGGGAGAGGAGCCGCACCCGGCCAACCCGGCCCCCAGCCCCAT
GGACCTCCGAGCAGGGGACTCGTGGGGGATGTTAGCTTGCCTGTGCACGGTGCTCTGGCACCTC
CCTGCAGTGCCAGCTCTCAATCGCACAGGGGACCCAGGGCCTGGCCCCTCCATCCAGAAAACTT
ACGACCTCACCCGATACCTGGAGCACCAACTCCGCAGCTTGGCTGGGACCTACCTGAACTACCT
GGGGCCTCCTTTCAACGAGCCTGACTTCAACCCCCCGCGGCTGGGGGCAGAGACTCTGCCCAGG
GCCACTGTTAACTTGGATGTGTGGCGAAGCCTCAATGACAAACTGCGGTTGACCCAGAACTATG
AGGCCTATAGCCACCTCCTGTGTTACTTGCGTGGCCTCAACCGTCAGGCTGCCACGGGGGAGCT
GCGCCGCAGCCTGGCCCACTTCTGTACCAGCCTCCAGGGCCTGCTGGGAAGCATTGCAGGAGTC
ATGGCAGCTCTGGGCTACCCACTGCCCCAGCCTCTGCCAGGAACTGAGCCCACTTGGGCCCCTG
GCCCTGCCCACAGCGACTTCCTCCAGAAGATGGATGACTTCTGGCTGCTGAAGGAGCTGCAGAC
CTGGCTATGGCGCTCCGCCAAGGACTTCAACCGGCTTAAGAAGAAAATGCAGCCTCCAGCAGCT
GCGGTCACCCTACACCTGGAGGCCCATGGCTTCTGATCTCTGACCTTTACTATATCCTCTTTTC
CCCCTTCAAGTTCTGCTCCCACTCTGGGAGGGAGAAACCTGTATGCCAATACTTGTTGAGCCAG
GGGACAGACAGTGGGAGCCTTGTCCCTCCCTGGCCTTGGACAGGGGTATGGTGTGATCAGCCTC
ATCTCCTGCCCAGCTCCCAGAGTCCTATGGGTCTGGAGAAGAGGCACTGCCCTGTCTTCACAGA
GGTAATGCTCAAGGGAGTGGAATGGCTCTCACCACCTCCTGCTTCCTGCCCACCACCTCCAGTG
CCCGCCCAGCCCCTTCTGTAGCACTTCCAGAAGCACATATGAAAGGCAAGGGAAGGGGGCCACC
ACAGCATGTGCCTTTCTGAGGTGAAGCCCTTTGGCTGCCCTCACCTCCCTTAACGGGTGTTGCT
CTCTTGCCCCAATAACTACACATCCAGTTCAGGAAAAAGACATGGCAATGAGTCTAAACAGGAA
GAGATGGGAGAAAAACAGAAGGGGTGGCCTGCACTGGAGATGGCCTAGAAACCAGAAGAGCGTA
TATTGACAGAGAGGGACAGGGATAGACAAGACCCAGCTGTCACCAAGTCAGTCAGTGGTACAGG
GTGGCGCAAAAAAAAAAAAAGCCACATCATGCATTAGGACCTTGCCTTGAATTTTCTTGCCGGC
ATCAAGGTGCCTCCTATCCATCACCTTTCCCAGGGTGTCTGTGGTTGCCCAGGCTGGAGAAGGT
AGCCACAGCCAAAGCCACAACCGCAGCCACGGGTTTCCTGAAAGTTTACATTGCAGTAGCATTG
TGGGGTGTGGGGGGCGGCTCTCCCAGGCTCTGCTCCCCCATCCCCACCCACTCATGACTCTTAA
GTTTGTTGTATTAATATTTATTTATTTGGAGATGTTATTTATTAGATGATATTTATTGCAGAAT
TTCTATTCTTGTATTAACAAATAAAATGCTTGCCCCAGAA

hide sequence

RefSeq Acc Id:

XM_005384339 ⟹ XP_005384396

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955422	18,099,147 - 18,108,628 (+)	NCBI

Sequence:

show sequence

GGCGTCCGAGGCCCTGGCCCCCGCCCGGCAGCCGCGAGATAGAGATCCGGTTCCAGTCCTCTCC
CCCACCCCAGGGAACCCCACGCAGGGGCCCGGCCGAGGAGCAAGGCTCGGGCCGGGGGAGGCAC
GGCTGGGCGCCCTCGAGAGGGGCCGGGCGGGGACGCGGCATTCCTGGAGTCCGCTGCGCGGGGC
CAGGAGTGGCCGGGACCGCGGCGGGTGCTCGGACGGCCGCAGACCTGGGGAGGCGGCAACCTGA
GCCCGGCCGAGACGGCTCCCAGGGAACCGGCGGACAGAGAGCCCAGCGCAAAAGTCCGGGCTAG
CAAGTCCAAGGCGGGGAGCAAGGCTGCTGGGGGAGACGCGCGGCGCGAGGGAAAGGGTCGCAGA
GAGGAAGAGGGAGGGCGAGGCAGGGGGAGCCCGGGCCGGGCCGGTGGGGGGCGAAGGGAGGCCG
ACACCTCGGGCCGCACTGCTCTCCCTCCCGCCCGCCTTCCCCTCCCGGCGGGCCGGGGAGGGAA
GGAGGGCGGGCGAGAGACGAGGAGAGAGGAGGGCGGAGGGCAGAGTGAGCCTGGCTGGGCCGCG
GGACTCGCAGTGGCTCGCTGCGCGCAGGGCGGCCGGAGCCCTCCATGCTGCCCACGACCGGGGA
GCCGGCGGCAGGGGACTCGTGGGGGATGTTAGCTTGCCTGTGCACGGTGCTCTGGCACCTCCCT
GCAGTGCCAGCTCTCAATCGCACAGGGGACCCAGGGCCTGGCCCCTCCATCCAGAAAACTTACG
ACCTCACCCGATACCTGGAGCACCAACTCCGCAGCTTGGCTGGGACCTACCTGAACTACCTGGG
GCCTCCTTTCAACGAGCCTGACTTCAACCCCCCGCGGCTGGGGGCAGAGACTCTGCCCAGGGCC
ACTGTTAACTTGGATGTGTGGCGAAGCCTCAATGACAAACTGCGGTTGACCCAGAACTATGAGG
CCTATAGCCACCTCCTGTGTTACTTGCGTGGCCTCAACCGTCAGGCTGCCACGGGGGAGCTGCG
CCGCAGCCTGGCCCACTTCTGTACCAGCCTCCAGGGCCTGCTGGGAAGCATTGCAGGAGTCATG
GCAGCTCTGGGCTACCCACTGCCCCAGCCTCTGCCAGGAACTGAGCCCACTTGGGCCCCTGGCC
CTGCCCACAGCGACTTCCTCCAGAAGATGGATGACTTCTGGCTGCTGAAGGAGCTGCAGACCTG
GCTATGGCGCTCCGCCAAGGACTTCAACCGGCTTAAGAAGAAAATGCAGCCTCCAGCAGCTGCG
GTCACCCTACACCTGGAGGCCCATGGCTTCTGATCTCTGACCTTTACTATATCCTCTTTTCCCC
CTTCAAGTTCTGCTCCCACTCTGGGAGGGAGAAACCTGTATGCCAATACTTGTTGAGCCAGGGG
ACAGACAGTGGGAGCCTTGTCCCTCCCTGGCCTTGGACAGGGGTATGGTGTGATCAGCCTCATC
TCCTGCCCAGCTCCCAGAGTCCTATGGGTCTGGAGAAGAGGCACTGCCCTGTCTTCACAGAGGT
AATGCTCAAGGGAGTGGAATGGCTCTCACCACCTCCTGCTTCCTGCCCACCACCTCCAGTGCCC
GCCCAGCCCCTTCTGTAGCACTTCCAGAAGCACATATGAAAGGCAAGGGAAGGGGGCCACCACA
GCATGTGCCTTTCTGAGGTGAAGCCCTTTGGCTGCCCTCACCTCCCTTAACGGGTGTTGCTCTC
TTGCCCCAATAACTACACATCCAGTTCAGGAAAAAGACATGGCAATGAGTCTAAACAGGAAGAG
ATGGGAGAAAAACAGAAGGGGTGGCCTGCACTGGAGATGGCCTAGAAACCAGAAGAGCGTATAT
TGACAGAGAGGGACAGGGATAGACAAGACCCAGCTGTCACCAAGTCAGTCAGTGGTACAGGGTG
GCGCAAAAAAAAAAAAAGCCACATCATGCATTAGGACCTTGCCTTGAATTTTCTTGCCGGCATC
AAGGTGCCTCCTATCCATCACCTTTCCCAGGGTGTCTGTGGTTGCCCAGGCTGGAGAAGGTAGC
CACAGCCAAAGCCACAACCGCAGCCACGGGTTTCCTGAAAGTTTACATTGCAGTAGCATTGTGG
GGTGTGGGGGGCGGCTCTCCCAGGCTCTGCTCCCCCATCCCCACCCACTCATGACTCTTAAGTT
TGTTGTATTAATATTTATTTATTTGGAGATGTTATTTATTAGATGATATTTATTGCAGAATTTC
TATTCTTGTATTAACAAATAAAATGCTTGCCCCAGAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005384395	(Get FASTA)	NCBI Sequence Viewer
	XP_005384396	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000023917.1

RefSeq Acc Id:

XP_005384395 ⟸ XM_005384338

- Peptide Label:

isoform X1

- Sequence:

show sequence

MASSSRLAPDPGSGESADGPMPSLPPPPGGPGWYRRSLASPHPPLSVVGGREAPEALPSRFPPP
PPTPGRAATICGYSFTRQKKKSLQNVPHRKKKNPKPSEKNLRVGLADGIIKASPEPRLALPLRQ
PLGEEPHPANPAPSPMDLRAGDSWGMLACLCTVLWHLPAVPALNRTGDPGPGPSIQKTYDLTRY
LEHQLRSLAGTYLNYLGPPFNEPDFNPPRLGAETLPRATVNLDVWRSLNDKLRLTQNYEAYSHL
LCYLRGLNRQAATGELRRSLAHFCTSLQGLLGSIAGVMAALGYPLPQPLPGTEPTWAPGPAHSD
FLQKMDDFWLLKELQTWLWRSAKDFNRLKKKMQPPAAAVTLHLEAHGF

hide sequence

RefSeq Acc Id:	XP_005384396 ⟸ XM_005384339
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2W8V5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLPTTGEPAAGDSWGMLACLCTVLWHLPAVPALNRTGDPGPGPSIQKTYDLTRYLEHQLRSLAG TYLNYLGPPFNEPDFNPPRLGAETLPRATVNLDVWRSLNDKLRLTQNYEAYSHLLCYLRGLNRQ AATGELRRSLAHFCTSLQGLLGSIAGVMAALGYPLPQPLPGTEPTWAPGPAHSDFLQKMDDFWL LKELQTWLWRSAKDFNRLKKKMQPPAAAVTLHLEAHGF hide sequence

RefSeq Acc Id:

ENSCLAP00000023917 ⟸ ENSCLAT00000024144

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000016411	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000024144.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1250.10	UniProtKB/TrEMBL
InterPro	4_helix_cytokine-like_core	UniProtKB/TrEMBL
	PRF/CT	UniProtKB/TrEMBL
NCBI Gene	Clcf1	ENTREZGENE
PANTHER	CARDIOTROPHIN-LIKE CYTOKINE FACTOR 1	UniProtKB/TrEMBL
	PTHR21353	UniProtKB/TrEMBL
Pfam	PRF	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47266	UniProtKB/TrEMBL
UniProt	A0A8C2W8V5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-02-28	Clcf1	cardiotrophin like cytokine factor 1		cardiotrophin-like cytokine factor 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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