Bbx (BBX high mobility group box domain containing) - Rat Genome Database

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Gene: Bbx (BBX high mobility group box domain containing) Chinchilla lanigera
Analyze
Symbol: Bbx
Name: BBX high mobility group box domain containing
RGD ID: 8882929
Description: ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN bone development (ortholog); ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BBX, HMG-box containing; bobby sox homolog (Drosophila); HMG box transcription factor BBX
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554278,339,092 - 8,470,707 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554278,221,339 - 8,476,405 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Bbx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554278,339,092 - 8,470,707 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554278,221,339 - 8,476,405 (+)NCBIChiLan1.0ChiLan1.0
BBX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383107,522,962 - 107,811,339 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3107,522,936 - 107,811,339 (+)EnsemblGRCh38hg38GRCh38
GRCh373107,241,809 - 107,530,186 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363108,724,480 - 109,007,399 (+)NCBINCBI36Build 36hg18NCBI36
Build 343108,724,479 - 109,007,395NCBI
Celera3105,638,147 - 105,926,340 (+)NCBICelera
Cytogenetic Map3q13.12NCBI
HuRef3104,615,349 - 104,903,664 (+)NCBIHuRef
CHM1_13107,206,091 - 107,494,354 (+)NCBICHM1_1
T2T-CHM13v2.03110,242,748 - 110,531,095 (+)NCBIT2T-CHM13v2.0
Bbx
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391650,012,207 - 50,252,829 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1650,012,207 - 50,252,753 (-)EnsemblGRCm39 Ensembl
GRCm381650,191,844 - 50,432,466 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1650,191,844 - 50,432,390 (-)EnsemblGRCm38mm10GRCm38
MGSCv371650,191,957 - 50,432,502 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361650,116,507 - 50,351,729 (-)NCBIMGSCv36mm8
Celera1650,536,366 - 50,776,574 (-)NCBICelera
Cytogenetic Map16B5NCBI
cM Map1631.35NCBI
Bbx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81163,850,034 - 64,097,700 (+)NCBIGRCr8
mRatBN7.21150,381,249 - 50,628,934 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1150,381,247 - 50,623,251 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1159,249,540 - 59,392,174 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01151,911,234 - 52,053,882 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01151,035,362 - 51,177,756 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01152,983,286 - 53,228,557 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1153,081,025 - 53,228,716 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01156,153,038 - 56,397,255 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41151,655,446 - 51,799,132 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11151,765,817 - 51,857,084 (+)NCBI
Celera1150,128,289 - 50,267,567 (+)NCBICelera
Cytogenetic Map11q21NCBI
BBX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22105,506,293 - 105,794,524 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13105,511,071 - 105,799,302 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03104,655,522 - 104,943,193 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13111,590,259 - 111,878,020 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3111,728,655 - 111,872,357 (+)Ensemblpanpan1.1panPan2
BBX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13312,833,030 - 13,101,554 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3312,833,053 - 13,101,539 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3312,938,918 - 13,207,222 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03312,998,286 - 13,266,737 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3312,998,286 - 13,266,642 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13312,868,445 - 13,139,431 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03312,935,044 - 13,205,312 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03313,346,521 - 13,615,301 (+)NCBIUU_Cfam_GSD_1.0
Bbx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602141,693,408 - 141,961,974 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366451,056,658 - 1,147,385 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936645883,650 - 1,152,349 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BBX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13151,722,098 - 152,005,045 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113151,718,376 - 152,005,091 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213160,753,551 - 160,875,287 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BBX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12272,982,582 - 73,259,591 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2272,988,468 - 73,092,151 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604193,226,649 - 93,500,833 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bbx
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473141,795,134 - 41,886,074 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473141,789,470 - 42,054,333 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005386346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005386349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005386351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005386352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013515184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013515185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013515186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013515187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01027068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01027069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01027070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01027071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01027072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01027073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01027074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBBH01150536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000013055   ⟹   ENSCLAP00000012905
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554278,339,092 - 8,470,707 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000013056   ⟹   ENSCLAP00000012906
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554278,339,092 - 8,470,707 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000013057   ⟹   ENSCLAP00000012907
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554278,381,647 - 8,470,707 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000013058   ⟹   ENSCLAP00000012908
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554278,381,647 - 8,470,707 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000013059   ⟹   ENSCLAP00000012909
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554278,381,647 - 8,470,707 (+)Ensembl
RefSeq Acc Id: XM_005386346   ⟹   XP_005386403
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554278,221,339 - 8,476,405 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005386349   ⟹   XP_005386406
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554278,328,193 - 8,476,405 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005386351   ⟹   XP_005386408
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554278,221,339 - 8,476,405 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005386352   ⟹   XP_005386409
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554278,221,339 - 8,476,405 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515184   ⟹   XP_013370638
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554278,290,022 - 8,476,405 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515185   ⟹   XP_013370639
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554278,221,339 - 8,476,405 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515186   ⟹   XP_013370640
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554278,339,383 - 8,476,405 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515187   ⟹   XP_013370641
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554278,221,339 - 8,476,405 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005386403   ⟸   XM_005386346
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VCL0 (UniProtKB/TrEMBL),   A0A8C2VGA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005386409   ⟸   XM_005386352
- Peptide Label: isoform X3
- UniProtKB: A0A8C2VHD9 (UniProtKB/TrEMBL),   A0A8C2VGA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005386408   ⟸   XM_005386351
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VEM6 (UniProtKB/TrEMBL),   A0A8C2VGA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005386406   ⟸   XM_005386349
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VCL0 (UniProtKB/TrEMBL),   A0A8C2VGA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013370641   ⟸   XM_013515187
- Peptide Label: isoform X4
- UniProtKB: A0A8C2VD72 (UniProtKB/TrEMBL),   A0A8C2VGA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013370639   ⟸   XM_013515185
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VCL0 (UniProtKB/TrEMBL),   A0A8C2VGA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013370638   ⟸   XM_013515184
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VCL0 (UniProtKB/TrEMBL),   A0A8C2VGA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013370640   ⟸   XM_013515186
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VCL0 (UniProtKB/TrEMBL),   A0A8C2VGA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000012909   ⟸   ENSCLAT00000013059
RefSeq Acc Id: ENSCLAP00000012905   ⟸   ENSCLAT00000013055
RefSeq Acc Id: ENSCLAP00000012906   ⟸   ENSCLAT00000013056
RefSeq Acc Id: ENSCLAP00000012907   ⟸   ENSCLAT00000013057
RefSeq Acc Id: ENSCLAP00000012908   ⟸   ENSCLAT00000013058
Protein Domains
DUF2028   HMG box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008912 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000013055 ENTREZGENE
  ENSCLAT00000013055.1 UniProtKB/TrEMBL
  ENSCLAT00000013056 ENTREZGENE
  ENSCLAT00000013056.1 UniProtKB/TrEMBL
  ENSCLAT00000013057 ENTREZGENE
  ENSCLAT00000013057.1 UniProtKB/TrEMBL
  ENSCLAT00000013058 ENTREZGENE
  ENSCLAT00000013058.1 UniProtKB/TrEMBL
  ENSCLAT00000013059.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.30.10 UniProtKB/TrEMBL
InterPro BBX_HMG-box UniProtKB/TrEMBL
  HMG_box_dom UniProtKB/TrEMBL
  HMG_box_dom_sf UniProtKB/TrEMBL
  TF_HMG_box_BBX_DUF2028 UniProtKB/TrEMBL
NCBI Gene Bbx ENTREZGENE
PANTHER HMG BOX TRANSCRIPTION FACTOR BBX UniProtKB/TrEMBL
  HMG-BOX TRANSCRIPTION FACTOR BBX UniProtKB/TrEMBL
Pfam DUF2028 UniProtKB/TrEMBL
  HMG_box UniProtKB/TrEMBL
PROSITE HMG_BOX_2 UniProtKB/TrEMBL
SMART HMG UniProtKB/TrEMBL
Superfamily-SCOP SSF47095 UniProtKB/TrEMBL
UniProt A0A8C2VCL0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VD72 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VEM6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VGA3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VHD9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-02-05 Bbx  BBX high mobility group box domain containing    BBX, HMG-box containing  Symbol and/or name change 5135510 APPROVED
2016-08-03 Bbx  BBX, HMG-box containing    bobby sox homolog (Drosophila)  Symbol and/or name change 5135510 APPROVED