Gria1 (glutamate ionotropic receptor AMPA type subunit 1) - Rat Genome Database

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Gene: Gria1 (glutamate ionotropic receptor AMPA type subunit 1) Chinchilla lanigera
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Symbol: Gria1
Name: glutamate ionotropic receptor AMPA type subunit 1
RGD ID: 8880027
Description: ENCODES a protein that exhibits adenylate cyclase binding (ortholog); AMPA glutamate receptor activity (ortholog); amyloid-beta binding (ortholog); INVOLVED IN behavioral response to pain (ortholog); cellular response to amine stimulus (ortholog); cellular response to amino acid stimulus (ortholog); PARTICIPATES IN calcium/calmodulin dependent kinase 2 signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; Reelin signaling pathway; ASSOCIATED WITH alcohol dependence (ortholog); alcohol use disorder (ortholog); allergic rhinitis (ortholog); FOUND IN neuronal cell body; AMPA glutamate receptor complex (ortholog); asymmetric synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Glur1; glutamate receptor 1; glutamate receptor, ionotropic, AMPA 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554087,912,592 - 8,223,570 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554087,912,223 - 8,226,241 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
behavioral response to pain  (ISO)
cellular response to amine stimulus  (ISO)
cellular response to amino acid stimulus  (ISO)
cellular response to ammonium ion  (ISO)
cellular response to brain-derived neurotrophic factor stimulus  (ISO)
cellular response to dsRNA  (ISO)
cellular response to growth factor stimulus  (ISO)
cellular response to organic cyclic compound  (ISO)
cellular response to peptide hormone stimulus  (ISO)
cerebral cortex development  (ISO)
chemical synaptic transmission  (ISO)
conditioned place preference  (ISO)
long-term memory  (ISO)
long-term synaptic depression  (ISO)
long-term synaptic potentiation  (ISO)
modulation of chemical synaptic transmission  (ISO)
neuronal action potential  (ISO)
positive regulation of excitatory postsynaptic potential  (ISO)
positive regulation of gene expression  (ISO)
positive regulation of locomotion involved in locomotory behavior  (ISO)
positive regulation of membrane potential  (ISO)
positive regulation of synaptic transmission  (ISO)
receptor internalization  (ISO)
regulation of monoatomic ion transmembrane transport  (ISO)
regulation of postsynaptic membrane potential  (ISO)
regulation of receptor recycling  (ISO)
regulation of synaptic plasticity  (ISO)
response to arsenic-containing substance  (ISO)
response to cocaine  (ISO)
response to electrical stimulus  (ISO)
response to estradiol  (ISO)
response to ethanol  (ISO)
response to fungicide  (ISO)
response to lithium ion  (ISO)
response to morphine  (ISO)
response to organic cyclic compound  (ISO)
response to peptide hormone  (ISO)
response to psychosocial stress  (ISO)
response to toxic substance  (ISO)
response to xenobiotic stimulus  (ISO)
spinal cord development  (ISO)
synapse assembly  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. Expression of the AMPA-selective receptor subunits in the vestibular nuclei of the chinchilla. Popper P, etal., Brain Res Mol Brain Res. 1997 Feb;44(1):21-30.
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gria1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554087,912,592 - 8,223,570 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554087,912,223 - 8,226,241 (+)NCBIChiLan1.0ChiLan1.0
GRIA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385153,489,615 - 153,813,869 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5153,489,615 - 153,813,869 (+)EnsemblGRCh38hg38GRCh38
GRCh375152,870,230 - 153,193,429 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365152,850,499 - 153,171,354 (+)NCBINCBI36Build 36hg18NCBI36
Build 345152,850,498 - 153,171,354NCBI
Celera5148,945,616 - 149,268,929 (+)NCBICelera
Cytogenetic Map5q33.2NCBI
HuRef5148,010,721 - 148,334,111 (+)NCBIHuRef
CHM1_15152,302,506 - 152,626,274 (+)NCBICHM1_1
T2T-CHM13v2.05154,022,776 - 154,347,051 (+)NCBIT2T-CHM13v2.0
Gria1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391156,902,342 - 57,221,070 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1156,902,213 - 57,221,070 (+)EnsemblGRCm39 Ensembl
GRCm381157,011,571 - 57,330,244 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1157,011,387 - 57,330,244 (+)EnsemblGRCm38mm10GRCm38
MGSCv371156,825,193 - 57,143,746 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361156,855,379 - 57,146,439 (+)NCBIMGSCv36mm8
Celera1161,935,002 - 62,079,468 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1134.51NCBI
Gria1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81041,710,540 - 42,030,105 (+)NCBIGRCr8
mRatBN7.21041,210,713 - 41,527,283 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1041,210,713 - 41,527,283 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1045,861,160 - 46,177,214 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01045,351,373 - 45,667,433 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01040,855,030 - 41,171,065 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01042,441,723 - 42,760,200 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1042,614,713 - 42,760,200 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01042,257,736 - 42,571,220 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41042,613,359 - 42,616,610 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1040,506,762 - 40,822,664 (+)NCBICelera
Cytogenetic Map10q22NCBI
GRIA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24148,684,899 - 149,011,988 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15146,824,470 - 147,151,533 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05148,879,996 - 149,206,914 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15154,877,807 - 155,204,660 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5154,879,080 - 155,204,660 (+)Ensemblpanpan1.1panPan2
GRIA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1455,801,269 - 56,103,383 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl455,803,296 - 56,103,669 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha455,639,927 - 55,995,772 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0456,183,572 - 56,538,983 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl456,237,177 - 56,538,754 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1456,012,350 - 56,367,654 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0456,111,546 - 56,466,793 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0456,613,928 - 56,969,631 (-)NCBIUU_Cfam_GSD_1.0
Gria1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213110,488,036 - 110,787,054 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365158,940,009 - 9,083,151 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365158,937,391 - 9,236,438 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRIA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1669,332,587 - 69,655,380 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11669,332,786 - 69,654,366 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21675,191,970 - 75,275,696 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GRIA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12355,944,128 - 56,265,748 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2356,101,294 - 56,265,849 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603421,402,866 - 21,730,046 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gria1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473335,339,683 - 35,647,349 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473335,337,039 - 35,648,184 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000025107   ⟹   ENSCLAP00000024867
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554087,912,592 - 8,223,570 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000025108   ⟹   ENSCLAP00000024868
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554087,912,791 - 8,223,570 (+)Ensembl
RefSeq Acc Id: XM_005376179   ⟹   XP_005376236
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554087,912,225 - 8,226,241 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005376180   ⟹   XP_005376237
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554087,912,225 - 8,226,241 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005376183   ⟹   XP_005376240
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554087,912,223 - 8,223,456 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005376185   ⟹   XP_005376242
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554088,056,655 - 8,226,241 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005376240   ⟸   XM_005376183
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005376237   ⟸   XM_005376180
- Peptide Label: isoform X2
- UniProtKB: A0A8C2W8Q4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005376236   ⟸   XM_005376179
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W426 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005376242   ⟸   XM_005376185
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSCLAP00000024868   ⟸   ENSCLAT00000025108
RefSeq Acc Id: ENSCLAP00000024867   ⟸   ENSCLAT00000025107

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017069 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000025107 ENTREZGENE
  ENSCLAT00000025107.1 UniProtKB/TrEMBL
  ENSCLAT00000025108 ENTREZGENE
  ENSCLAT00000025108.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/TrEMBL
  Periplasmic binding protein-like II UniProtKB/TrEMBL
InterPro ANF_lig-bd_rcpt UniProtKB/TrEMBL
  Glu/Gly-bd UniProtKB/TrEMBL
  Iono_rcpt_met UniProtKB/TrEMBL
  Ionotropic_Glu_rcpt UniProtKB/TrEMBL
  Iontro_rcpt UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/TrEMBL
  Solute-binding_3/MltF_N UniProtKB/TrEMBL
NCBI Gene Gria1 ENTREZGENE
PANTHER GLUTAMATE RECEPTOR 1 UniProtKB/TrEMBL
  IONOTROPIC GLUTAMATE RECEPTOR UniProtKB/TrEMBL
Pfam ANF_receptor UniProtKB/TrEMBL
  Lig_chan UniProtKB/TrEMBL
  Lig_chan-Glu_bd UniProtKB/TrEMBL
  SBP_bac_3 UniProtKB/TrEMBL
PRINTS NMDARECEPTOR UniProtKB/TrEMBL
SMART Lig_chan-Glu_bd UniProtKB/TrEMBL
  PBPe UniProtKB/TrEMBL
Superfamily-SCOP Periplasmic binding protein-like II UniProtKB/TrEMBL
  SSF53822 UniProtKB/TrEMBL
  Voltage-gated potassium channels UniProtKB/TrEMBL
UniProt A0A8C2W426 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2W8Q4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Gria1  glutamate ionotropic receptor AMPA type subunit 1    glutamate receptor, ionotropic, AMPA 1  Symbol and/or name change 5135510 APPROVED