Dync1h1 (dynein cytoplasmic 1 heavy chain 1) - Rat Genome Database

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Gene: Dync1h1 (dynein cytoplasmic 1 heavy chain 1) Chinchilla lanigera
Analyze
Symbol: Dync1h1
Name: dynein cytoplasmic 1 heavy chain 1
RGD ID: 8870766
Description: ENCODES a protein that exhibits dynein light intermediate chain binding (ortholog); minus-end-directed microtubule motor activity (ortholog); INVOLVED IN cellular response to 3,3',5-triiodo-L-thyronine (ortholog); cellular response to nerve growth factor stimulus (ortholog); establishment of spindle localization (ortholog); PARTICIPATES IN mitochondria transport pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); amyotrophic lateral sclerosis (ortholog); atrophic muscular disease (ortholog); FOUND IN axon (ortholog); centrosome (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cytoplasmic dynein 1 heavy chain 1; dynein, cytoplasmic 1, heavy chain 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555381,390,137 - 1,458,025 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555381,388,595 - 1,458,166 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
Alzheimer's disease  (ISO)
amyotrophic lateral sclerosis  (ISO)
atrophic muscular disease  (ISO)
autism spectrum disorder  (ISO)
autosomal dominant cerebellar ataxia  (ISO)
autosomal dominant distal hereditary motor neuronopathy  (ISO)
autosomal dominant distal hereditary motor neuronopathy 14  (ISO)
autosomal dominant intellectual developmental disorder 13  (ISO)
cerebellar ataxia  (ISO)
cerebellar hypoplasia  (ISO)
Charcot-Marie-Tooth disease  (ISO)
Charcot-Marie-Tooth disease axonal type 2O  (ISO)
Charcot-Marie-Tooth disease type 1  (ISO)
Charcot-Marie-Tooth disease type 2  (ISO)
Charcot-Marie-Tooth disease type 4  (ISO)
Charcot-Marie-Tooth disease type 5  (ISO)
childhood spinal muscular atrophy  (ISO)
complex cortical dysplasia with other brain malformations  (ISO)
Developmental Disabilities  (ISO)
epilepsy  (ISO)
fetal akinesia deformation sequence syndrome 1  (ISO)
genetic disease  (ISO)
intellectual disability  (ISO)
lissencephaly  (ISO)
microcephaly  (ISO)
motor peripheral neuropathy  (ISO)
Muscle Weakness  (ISO)
muscular disease  (ISO)
myopathy  (ISO)
Nervous System Malformations  (ISO)
NEURODEVELOPMENTAL DISORDER WITH MICROCEPHALY, ARTHROGRYPOSIS, AND STRUCTURAL BRAIN ANOMALIES  (ISO)
Neurodevelopmental Disorders  (ISO)
neuropathy  (ISO)
peripheral nervous system disease  (ISO)
polyneuropathy  (ISO)
spinal muscular atrophy  (ISO)
spinal muscular atrophy with predominant lower extremity  (ISO)
spinal muscular atrophy with predominant lower extremity 1  (ISO)
Spinocerebellar Ataxias  (ISO)
Talipes Cavus  (ISO)
thyroid gland papillary carcinoma  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Dync1h1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555381,390,137 - 1,458,025 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555381,388,595 - 1,458,166 (+)NCBIChiLan1.0ChiLan1.0
DYNC1H1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814101,964,573 - 102,056,443 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14101,964,573 - 102,056,443 (+)EnsemblGRCh38hg38GRCh38
GRCh3714102,430,910 - 102,522,780 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614101,500,734 - 101,586,888 (+)NCBINCBI36Build 36hg18NCBI36
Build 3414101,500,736 - 101,586,887NCBI
Celera1482,485,364 - 82,571,630 (+)NCBICelera
Cytogenetic Map14q32.31NCBI
HuRef1482,609,802 - 82,696,060 (+)NCBIHuRef
CHM1_114102,368,694 - 102,454,973 (+)NCBICHM1_1
T2T-CHM13v2.01496,200,188 - 96,292,054 (+)NCBIT2T-CHM13v2.0
Dync1h1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912110,567,829 - 110,633,378 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12110,567,886 - 110,633,379 (+)EnsemblGRCm39 Ensembl
GRCm3812110,601,395 - 110,666,944 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12110,601,452 - 110,666,945 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712111,839,605 - 111,905,154 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612111,049,261 - 111,114,731 (+)NCBIMGSCv36mm8
Celera12111,791,744 - 111,857,176 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1260.7NCBI
Dync1h1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86135,436,375 - 135,502,117 (+)NCBIGRCr8
mRatBN7.26129,615,208 - 129,680,888 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6129,609,397 - 129,680,883 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6129,792,251 - 129,857,975 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06130,088,243 - 130,153,968 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06129,452,122 - 129,517,762 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06134,958,854 - 135,085,769 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6134,958,854 - 135,085,769 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06144,094,877 - 144,159,980 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46135,318,083 - 135,391,459 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16135,324,200 - 135,397,646 (+)NCBI
Celera6127,184,881 - 127,250,555 (+)NCBICelera
Cytogenetic Map6q32NCBI
DYNC1H1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215103,116,643 - 103,202,954 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114102,333,470 - 102,419,449 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01482,584,876 - 82,670,750 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114102,406,807 - 102,489,678 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14102,406,993 - 102,489,475 (+)Ensemblpanpan1.1panPan2
DYNC1H1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1869,997,021 - 70,064,886 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl869,997,145 - 70,064,825 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha869,511,720 - 69,579,474 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0870,275,463 - 70,343,231 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl870,275,317 - 70,343,231 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1869,939,596 - 70,007,343 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0870,005,661 - 70,073,498 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0870,405,277 - 70,473,042 (+)NCBIUU_Cfam_GSD_1.0
Dync1h1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086403,905,752 - 3,970,028 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936835225,324 - 289,954 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936835225,879 - 290,160 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DYNC1H1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.27129,791,255 - 129,832,564 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DYNC1H1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12479,915,719 - 80,008,666 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2479,915,889 - 80,000,099 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605367,092,529 - 67,183,574 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dync1h1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247342,254,085 - 2,311,177 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247342,253,931 - 2,311,341 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000010854   ⟹   ENSCLAP00000010722
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555381,390,137 - 1,458,025 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000010855   ⟹   ENSCLAP00000010723
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555381,390,137 - 1,458,025 (+)Ensembl
RefSeq Acc Id: XM_013507827   ⟹   XP_013363281
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555381,388,600 - 1,458,166 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013507828   ⟹   XP_013363282
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555381,388,595 - 1,455,831 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013363281 (Get FASTA)   NCBI Sequence Viewer  
  XP_013363282 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000010722.1
  ENSCLAP00000010723
  ENSCLAP00000010723.1
RefSeq Acc Id: XP_013363282   ⟸   XM_013507828
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VBZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013363281   ⟸   XM_013507827
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VBZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000010722   ⟸   ENSCLAT00000010854
RefSeq Acc Id: ENSCLAP00000010723   ⟸   ENSCLAT00000010855
Protein Domains
AAA+ ATPase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007399 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000010854.1 UniProtKB/TrEMBL
  ENSCLAT00000010855 ENTREZGENE
  ENSCLAT00000010855.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.2620 UniProtKB/TrEMBL
  1.10.472.130 UniProtKB/TrEMBL
  1.10.8.1220 UniProtKB/TrEMBL
  1.10.8.710 UniProtKB/TrEMBL
  1.10.8.720 UniProtKB/TrEMBL
  1.20.1270.280 UniProtKB/TrEMBL
  1.20.140.100 UniProtKB/TrEMBL
  1.20.58.1120 UniProtKB/TrEMBL
  1.20.920.20 UniProtKB/TrEMBL
  1.20.920.30 UniProtKB/TrEMBL
  1.20.920.60 UniProtKB/TrEMBL
  3.10.490.20 UniProtKB/TrEMBL
  3.20.180.20 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
  6.10.140.1060 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  AAA_6 UniProtKB/TrEMBL
  AAA_9 UniProtKB/TrEMBL
  AAA_lid_11 UniProtKB/TrEMBL
  AAA_lid_11_sf UniProtKB/TrEMBL
  DHC_fam UniProtKB/TrEMBL
  Dynein_2_N UniProtKB/TrEMBL
  Dynein_AAA1S UniProtKB/TrEMBL
  Dynein_AAA5_ext UniProtKB/TrEMBL
  Dynein_C UniProtKB/TrEMBL
  Dynein_C_barrel UniProtKB/TrEMBL
  Dynein_HC_stalk UniProtKB/TrEMBL
  Dynein_heavy_chain_D4_dom UniProtKB/TrEMBL
  Dynein_heavy_D6_P-loop UniProtKB/TrEMBL
  Dynein_heavy_linker UniProtKB/TrEMBL
  Dynein_heavy_tail UniProtKB/TrEMBL
  Dynein_linker_3 UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene Dync1h1 ENTREZGENE
PANTHER DYNEIN CYTOPLASMIC 1 HEAVY CHAIN 1 UniProtKB/TrEMBL
  MALE FERTILITY FACTOR KL5 UniProtKB/TrEMBL
Pfam AAA_6 UniProtKB/TrEMBL
  AAA_7 UniProtKB/TrEMBL
  AAA_8 UniProtKB/TrEMBL
  AAA_9 UniProtKB/TrEMBL
  AAA_lid_11 UniProtKB/TrEMBL
  DHC_N1 UniProtKB/TrEMBL
  DHC_N2 UniProtKB/TrEMBL
  Dynein_AAA_lid UniProtKB/TrEMBL
  Dynein_C UniProtKB/TrEMBL
  Dynein_heavy UniProtKB/TrEMBL
  PF12777 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2V859_CHILA UniProtKB/TrEMBL
  A0A8C2VBZ6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Dync1h1  dynein cytoplasmic 1 heavy chain 1    dynein, cytoplasmic 1, heavy chain 1  Symbol and/or name change 5135510 APPROVED