Ctse (cathepsin E) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Ctse (cathepsin E) Chinchilla lanigera
Analyze
Symbol: Ctse
Name: cathepsin E
RGD ID: 8859537
Description: ENCODES a protein that exhibits aspartic-type endopeptidase activity (ortholog); identical protein binding (ortholog); peptidase activity (ortholog); INVOLVED IN antigen processing and presentation of exogenous peptide antigen via MHC class II (ortholog); protein autoprocessing (ortholog); proteolysis (ortholog); ASSOCIATED WITH atopic dermatitis (ortholog); autistic disorder (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN endosome (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540641,641,311 - 41,653,296 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540641,641,412 - 41,653,261 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ctse
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540641,641,311 - 41,653,296 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540641,641,412 - 41,653,261 (-)NCBIChiLan1.0ChiLan1.0
CTSE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381206,009,264 - 206,023,895 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1206,008,535 - 206,023,909 (-)EnsemblGRCh38hg38GRCh38
GRCh371206,317,473 - 206,332,104 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361204,484,082 - 204,498,727 (+)NCBINCBI36Build 36hg18NCBI36
Celera1179,116,519 - 179,131,198 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1177,247,760 - 177,262,405 (+)NCBIHuRef
T2T-CHM13v2.01205,273,263 - 205,287,895 (-)NCBIT2T-CHM13v2.0
Ctse
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,566,052 - 131,603,245 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1131,566,044 - 131,603,243 (+)EnsemblGRCm39 Ensembl
GRCm381131,638,314 - 131,675,507 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1131,638,306 - 131,675,505 (+)EnsemblGRCm38mm10GRCm38
MGSCv371133,534,891 - 133,572,084 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361133,465,860 - 133,503,049 (+)NCBIMGSCv36mm8
Celera1134,250,340 - 134,281,876 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map157.14NCBI
Ctse
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81345,644,168 - 45,666,722 (+)NCBIGRCr8
mRatBN7.21343,091,954 - 43,114,509 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1343,092,128 - 43,114,502 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1345,695,406 - 45,717,865 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01346,983,544 - 47,006,003 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01344,248,051 - 44,270,572 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01348,426,833 - 48,449,493 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1348,426,820 - 48,449,490 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01353,498,965 - 53,521,605 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41344,582,911 - 44,605,241 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11344,596,953 - 44,619,284 (+)NCBI
Celera1343,430,588 - 43,452,924 (+)NCBICelera
Cytogenetic Map13q13NCBI
CTSE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2143,346,170 - 43,361,406 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1143,311,665 - 43,326,899 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01181,617,421 - 181,632,260 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11185,900,746 - 185,915,368 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1185,900,746 - 185,915,519 (-)Ensemblpanpan1.1panPan2
CTSE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1382,368,711 - 2,380,554 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl382,369,265 - 2,380,459 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha382,461,257 - 2,473,099 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0382,365,859 - 2,377,730 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl382,365,857 - 2,377,890 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1382,359,989 - 2,371,820 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0382,751,514 - 2,763,344 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0382,952,739 - 2,964,581 (-)NCBIUU_Cfam_GSD_1.0
Ctse
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934469,245,473 - 69,258,551 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365576,485,755 - 6,498,833 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365576,485,783 - 6,498,805 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTSE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12523,318,421 - 23,333,885 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2523,319,248 - 23,332,980 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605524,017,015 - 24,031,766 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ctse
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248075,291,736 - 5,305,104 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248075,291,993 - 5,306,507 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000019078   ⟹   ENSCLAP00000018893
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540641,641,311 - 41,653,296 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000019079   ⟹   ENSCLAP00000018894
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540641,641,950 - 41,653,183 (-)Ensembl
RefSeq Acc Id: XM_005375381   ⟹   XP_005375438
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540641,641,413 - 41,653,261 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005375382   ⟹   XP_005375439
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540641,641,412 - 41,653,261 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005375438 (Get FASTA)   NCBI Sequence Viewer  
  XP_005375439 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000018893
  ENSCLAP00000018893.1
  ENSCLAP00000018894.1
Reference Protein Sequences
RefSeq Acc Id: XP_005375439   ⟸   XM_005375382
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005375438   ⟸   XM_005375381
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YRY6 (UniProtKB/TrEMBL),   A0A8C2YRY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000018894   ⟸   ENSCLAT00000019079
RefSeq Acc Id: ENSCLAP00000018893   ⟸   ENSCLAT00000019078
Protein Domains
Peptidase A1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012938 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000019078 ENTREZGENE
  ENSCLAT00000019078.1 UniProtKB/TrEMBL
  ENSCLAT00000019079.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.70.10 UniProtKB/TrEMBL
InterPro Aspartic_peptidase_A1 UniProtKB/TrEMBL
  Aspartic_peptidase_AS UniProtKB/TrEMBL
  PEPTIDASE_A1 UniProtKB/TrEMBL
  Peptidase_aspartic_dom_sf UniProtKB/TrEMBL
NCBI Gene Ctse ENTREZGENE
PANTHER PTHR47966 UniProtKB/TrEMBL
  PTHR47966:SF26 UniProtKB/TrEMBL
Pfam Asp UniProtKB/TrEMBL
PRINTS PEPSIN UniProtKB/TrEMBL
PROSITE ASP_PROTEASE UniProtKB/TrEMBL
  PEPTIDASE_A1 UniProtKB/TrEMBL
Superfamily-SCOP SSF50630 UniProtKB/TrEMBL
UniProt A0A8C2YRY3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YRY6 ENTREZGENE, UniProtKB/TrEMBL