Cetn1 (centrin 1) - Rat Genome Database

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Gene: Cetn1 (centrin 1) Chinchilla lanigera
Analyze
Symbol: Cetn1
Name: centrin 1
RGD ID: 8857242
Description: ENCODES a protein that exhibits G-protein beta/gamma-subunit complex binding (ortholog); heterotrimeric G-protein binding (ortholog); microtubule binding (ortholog); INVOLVED IN cellular response to heat (ortholog); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); microtubule organizing center (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: centrin, EF-hand protein, 1; centrin-1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554029,381,570 - 9,382,088 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554029,381,400 - 9,382,158 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cetn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554029,381,570 - 9,382,088 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554029,381,400 - 9,382,158 (-)NCBIChiLan1.0ChiLan1.0
CETN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3818580,380 - 582,114 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl18580,380 - 582,114 (+)EnsemblGRCh38hg38GRCh38
GRCh3718580,380 - 582,114 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3618570,367 - 571,524 (+)NCBINCBI36Build 36hg18NCBI36
Build 3418570,368 - 571,524NCBI
Celera18455,077 - 456,233 (+)NCBICelera
Cytogenetic Map18p11.32NCBI
HuRef18540,396 - 541,552 (+)NCBIHuRef
CHM1_118579,798 - 580,953 (+)NCBICHM1_1
T2T-CHM13v2.018734,775 - 736,509 (+)NCBIT2T-CHM13v2.0
Cetn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39189,618,419 - 9,619,469 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl189,615,524 - 9,619,478 (-)EnsemblGRCm39 Ensembl
GRCm38189,618,419 - 9,619,469 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl189,615,524 - 9,619,478 (-)EnsemblGRCm38mm10GRCm38
MGSCv37189,618,417 - 9,619,467 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36189,615,522 - 9,619,493 (-)NCBIMGSCv36mm8
Celera189,647,953 - 9,649,003 (-)NCBICelera
Cytogenetic Map18A1NCBI
cM Map184.91NCBI
Cetn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr818924,428 - 925,130 (-)NCBIGRCr8
mRatBN7.218651,591 - 652,293 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl18651,591 - 652,293 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx18871,206 - 871,908 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0181,659,031 - 1,659,733 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.018873,114 - 873,816 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.018785,972 - 786,674 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl18785,972 - 786,674 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.018829,964 - 830,666 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.418913,895 - 914,597 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.118914,058 - 914,424 (-)NCBI
Celera18548,510 - 549,212 (-)NCBICelera
Cytogenetic Map18p13NCBI
CETN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21737,918,069 - 37,922,823 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11823,610,661 - 23,615,415 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01813,743,197 - 13,744,490 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11817,385,106 - 17,386,772 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1817,386,201 - 17,386,719 (-)Ensemblpanpan1.1panPan2
CETN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1767,431,020 - 67,431,774 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl767,431,081 - 67,431,599 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha766,884,510 - 66,885,259 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0767,497,055 - 67,497,804 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl767,497,111 - 67,497,629 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1767,173,664 - 67,174,413 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0767,185,219 - 67,185,968 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0767,487,155 - 67,487,904 (+)NCBIUU_Cfam_GSD_1.0
Cetn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494463,713,028 - 63,713,902 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936550102,360 - 103,032 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CETN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6105,740,550 - 105,741,465 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16105,740,188 - 105,742,226 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CETN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11859,952,305 - 59,954,453 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1859,952,717 - 59,953,235 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605034,743,456 - 34,744,742 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cetn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477011,073,242 - 11,073,757 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477011,072,793 - 11,074,972 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000025891   ⟹   ENSCLAP00000025610
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554029,381,570 - 9,382,088 (-)Ensembl
RefSeq Acc Id: XM_005372681   ⟹   XP_005372738
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554029,381,400 - 9,382,158 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005372738 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000025610
  ENSCLAP00000025610.1
Reference Protein Sequences
RefSeq Acc Id: XP_005372738   ⟸   XM_005372681
- UniProtKB: A0A8C2W8G8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000025610   ⟸   ENSCLAT00000025891
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017717 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000025891 ENTREZGENE
  ENSCLAT00000025891.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  RNA-helicase_DEAD-box_CS UniProtKB/TrEMBL
NCBI Gene Cetn1 ENTREZGENE
PANTHER CALCIUM BINDING PROTEIN UniProtKB/TrEMBL
  PTHR23050:SF218 UniProtKB/TrEMBL
Pfam EF-hand_7 UniProtKB/TrEMBL
PROSITE DEAD_ATP_HELICASE UniProtKB/TrEMBL
  EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A8C2W8G8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Cetn1  centrin 1    centrin, EF-hand protein, 1  Symbol and/or name change 5135510 APPROVED