Clcn7 (chloride voltage-gated channel 7) - Rat Genome Database

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Gene: Clcn7 (chloride voltage-gated channel 7) Chinchilla lanigera
Analyze
Symbol: Clcn7
Name: chloride voltage-gated channel 7
RGD ID: 8853156
Description: INVOLVED IN response to pH (ortholog); transepithelial chloride transport (ortholog); ASSOCIATED WITH autosomal dominant osteopetrosis 2 (ortholog); autosomal recessive osteopetrosis 4 (ortholog); connective tissue disease (ortholog); FOUND IN chloride channel complex (ortholog); lysosomal membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chloride channel, voltage-sensitive 7; H(+)/Cl(-) exchange transporter 7
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544215,761,498 - 15,791,635 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544215,762,369 - 15,791,635 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Clcn7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544215,761,498 - 15,791,635 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544215,762,369 - 15,791,635 (+)NCBIChiLan1.0ChiLan1.0
CLCN7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38161,444,935 - 1,475,028 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl161,444,934 - 1,475,077 (-)EnsemblGRCh38hg38GRCh38
GRCh37161,494,936 - 1,525,029 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36161,435,345 - 1,465,013 (-)NCBINCBI36Build 36hg18NCBI36
Build 34161,435,345 - 1,465,013NCBI
Celera161,707,535 - 1,737,366 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef161,421,403 - 1,451,021 (-)NCBIHuRef
CHM1_1161,494,934 - 1,525,081 (-)NCBICHM1_1
T2T-CHM13v2.0161,459,595 - 1,489,742 (-)NCBIT2T-CHM13v2.0
Clcn7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391725,352,353 - 25,381,077 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1725,352,365 - 25,381,078 (+)EnsemblGRCm39 Ensembl
GRCm381725,133,378 - 25,162,103 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1725,133,391 - 25,162,104 (+)EnsemblGRCm38mm10GRCm38
MGSCv371725,270,339 - 25,299,044 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361724,860,994 - 24,889,699 (+)NCBIMGSCv36mm8
Celera1725,662,706 - 25,691,659 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.53NCBI
Clcn7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,656,261 - 14,681,632 (+)NCBIGRCr8
mRatBN7.21014,151,758 - 14,177,130 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1014,151,758 - 14,177,130 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1018,892,871 - 18,916,849 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01018,381,735 - 18,405,713 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01013,880,951 - 13,904,928 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01014,492,844 - 14,518,167 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,492,844 - 14,516,894 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01014,308,276 - 14,332,371 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41014,379,803 - 14,403,898 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11014,379,802 - 14,403,898 (+)NCBI
Celera1013,824,431 - 13,848,527 (+)NCBICelera
Cytogenetic Map10q12NCBI
CLCN7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2181,706,780 - 1,737,008 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1165,494,132 - 5,524,025 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01664,599 - 95,016 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1161,498,432 - 1,518,783 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl161,498,432 - 1,519,951 (-)Ensemblpanpan1.1panPan2
CLCN7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1639,331,100 - 39,356,477 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl639,331,170 - 39,364,991 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha640,599,413 - 40,624,744 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0639,677,448 - 39,703,019 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl639,677,417 - 39,703,019 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1639,354,554 - 39,380,013 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0639,326,733 - 39,352,471 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,805,488 - 39,830,881 (+)NCBIUU_Cfam_GSD_1.0
Clcn7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344104,241,730 - 104,265,151 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366942,444,343 - 2,467,733 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366942,444,321 - 2,467,734 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLCN7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl340,399,639 - 40,420,957 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1340,397,807 - 40,420,960 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2342,102,528 - 42,126,038 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLCN7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.151,355,558 - 1,383,755 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl51,355,016 - 1,383,695 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606829,703,015 - 29,731,580 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clcn7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249132,142,633 - 2,174,034 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249132,140,358 - 2,194,695 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000021198   ⟹   ENSCLAP00000020997
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544215,761,498 - 15,791,635 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000021199   ⟹   ENSCLAP00000020998
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544215,765,615 - 15,790,485 (+)Ensembl
RefSeq Acc Id: XM_005391549   ⟹   XP_005391606
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544215,762,369 - 15,791,635 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005391606 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000020997
  ENSCLAP00000020997.1
  ENSCLAP00000020998.1
RefSeq Acc Id: XP_005391606   ⟸   XM_005391549
- UniProtKB: A0A8C2VX35 (UniProtKB/TrEMBL),   A0A8C2VZB1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000020997   ⟸   ENSCLAT00000021198
RefSeq Acc Id: ENSCLAP00000020998   ⟸   ENSCLAT00000021199
Protein Domains
CBS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014385 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000021198 ENTREZGENE
  ENSCLAT00000021198.1 UniProtKB/TrEMBL
  ENSCLAT00000021199.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.580.10 UniProtKB/TrEMBL
  Clc chloride channel UniProtKB/TrEMBL
InterPro CBS_dom UniProtKB/TrEMBL
  CBS_dom_sf UniProtKB/TrEMBL
  Cl-channel_core UniProtKB/TrEMBL
  Cl-channel_volt-gated UniProtKB/TrEMBL
  Cl_channel-7 UniProtKB/TrEMBL
NCBI Gene Clcn7 ENTREZGENE
PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER UniProtKB/TrEMBL
  H(+)_CL(-) EXCHANGE TRANSPORTER 7 UniProtKB/TrEMBL
Pfam CBS UniProtKB/TrEMBL
  Voltage_CLC UniProtKB/TrEMBL
PRINTS CLCHANNEL UniProtKB/TrEMBL
  CLCHANNEL7 UniProtKB/TrEMBL
PROSITE CBS UniProtKB/TrEMBL
SMART CBS UniProtKB/TrEMBL
Superfamily-SCOP SSF54631 UniProtKB/TrEMBL
  SSF81340 UniProtKB/TrEMBL
UniProt A0A8C2VX35 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VZB1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Clcn7  chloride voltage-gated channel 7    chloride channel, voltage-sensitive 7  Symbol and/or name change 5135510 APPROVED