Ahcy (adenosylhomocysteinase) - Rat Genome Database

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Gene: Ahcy (adenosylhomocysteinase) Chinchilla lanigera
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Symbol: Ahcy
Name: adenosylhomocysteinase
RGD ID: 8837124
Description: ENCODES a protein that exhibits adenosylhomocysteinase activity (ortholog); adenyl nucleotide binding (ortholog); copper ion binding (ortholog); INVOLVED IN chronic inflammatory response to antigenic stimulus (ortholog); circadian sleep/wake cycle (ortholog); response to hypoxia (ortholog); PARTICIPATES IN choline metabolic pathway; glycine N-methyltransferase deficiency pathway; homocysteine metabolic pathway; ASSOCIATED WITH abdominal aortic aneurysm (ortholog); amino acid metabolic disorder (ortholog); Animal Disease Models (ortholog); FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542226,992,295 - 27,013,100 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542226,992,295 - 27,013,100 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ahcy
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542226,992,295 - 27,013,100 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542226,992,295 - 27,013,100 (+)NCBIChiLan1.0ChiLan1.0
AHCY
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382034,231,981 - 34,311,836 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2034,280,268 - 34,311,802 (-)EnsemblGRCh38hg38GRCh38
GRCh372032,868,074 - 32,899,608 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362032,331,737 - 32,354,784 (-)NCBINCBI36Build 36hg18NCBI36
Build 342032,331,736 - 32,354,784NCBI
Celera2029,617,551 - 29,649,079 (-)NCBICelera
Cytogenetic Map20q11.22ENTREZGENE
HuRef2029,649,874 - 29,681,357 (-)NCBIHuRef
CHM1_12032,769,165 - 32,800,706 (-)NCBICHM1_1
T2T-CHM13v2.02035,953,425 - 36,034,942 (-)NCBIT2T-CHM13v2.0
Ahcy
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392154,901,230 - 154,916,417 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2154,901,230 - 154,916,417 (-)EnsemblGRCm39 Ensembl
GRCm382155,059,310 - 155,074,497 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2155,059,310 - 155,074,497 (-)EnsemblGRCm38mm10GRCm38
MGSCv372154,885,046 - 154,900,233 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362154,750,751 - 154,765,867 (-)NCBIMGSCv36mm8
Celera2160,986,232 - 161,001,420 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map276.94NCBI
Ahcy
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83164,029,338 - 164,044,562 (-)NCBIGRCr8
mRatBN7.23143,569,134 - 143,584,359 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3143,569,094 - 143,584,393 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3147,436,772 - 147,451,996 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03156,054,058 - 156,069,282 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03153,793,593 - 153,808,817 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03150,587,833 - 150,603,057 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3150,587,833 - 150,603,082 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03156,957,240 - 156,972,464 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43145,544,834 - 145,560,058 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13145,450,455 - 145,465,680 (-)NCBI
Celera3142,299,485 - 142,314,709 (-)NCBICelera
Cytogenetic Map3q41NCBI
AHCY
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22139,981,145 - 40,031,255 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12039,980,593 - 40,024,358 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02030,603,701 - 30,626,835 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12031,738,007 - 31,760,803 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2031,738,007 - 31,760,803 (-)Ensemblpanpan1.1panPan2
AHCY
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12423,410,553 - 23,423,494 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2423,411,140 - 23,419,767 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2423,058,324 - 23,071,803 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02424,101,284 - 24,114,771 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2424,100,998 - 24,114,735 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12423,389,987 - 23,403,460 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02423,484,066 - 23,497,508 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02423,923,430 - 23,937,131 (-)NCBIUU_Cfam_GSD_1.0
Ahcy
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640172,415,357 - 172,434,758 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365616,314,705 - 6,334,439 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365616,314,797 - 6,333,961 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AHCY
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1737,726,084 - 37,744,461 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11737,726,084 - 37,744,378 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21742,693,955 - 42,706,644 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap17q21NCBI
AHCY
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1238,579,254 - 38,601,218 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl238,579,024 - 38,601,208 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605088,256,407 - 88,278,319 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ahcy
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248425,053,280 - 5,072,679 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248425,053,336 - 5,071,902 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000025411   ⟹   ENSCLAP00000025165
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542226,992,295 - 27,013,100 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000025412   ⟹   ENSCLAP00000025166
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542226,999,080 - 27,012,386 (+)Ensembl
RefSeq Acc Id: XM_005384832   ⟹   XP_005384889
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542226,992,295 - 27,013,100 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005384889 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000025165
  ENSCLAP00000025165.1
  ENSCLAP00000025166.1
RefSeq Acc Id: XP_005384889   ⟸   XM_005384832
- UniProtKB: A0A8C2WBW4 (UniProtKB/TrEMBL),   A0A8C2W7G1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000025165   ⟸   ENSCLAT00000025411
RefSeq Acc Id: ENSCLAP00000025166   ⟸   ENSCLAT00000025412

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017278 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000025411 ENTREZGENE
  ENSCLAT00000025411.1 UniProtKB/TrEMBL
  ENSCLAT00000025412.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1480 UniProtKB/TrEMBL
  NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro Adenosylhomocyst_ase-like_sf UniProtKB/TrEMBL
  Adenosylhomocysteinase-like UniProtKB/TrEMBL
  Ado_hCys_hydrolase_NAD-bd UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  S-Ado-L-homoCys_hydrolase_CS UniProtKB/TrEMBL
NCBI Gene Ahcy ENTREZGENE
PANTHER ADENOSYLHOMOCYSTEINASE UniProtKB/TrEMBL
  PTHR23420 UniProtKB/TrEMBL
Pfam AdoHcyase UniProtKB/TrEMBL
  AdoHcyase_NAD UniProtKB/TrEMBL
PIRSF Ad_hcy_hydrolase UniProtKB/TrEMBL
PROSITE ADOHCYASE_1 UniProtKB/TrEMBL
  ADOHCYASE_2 UniProtKB/TrEMBL
SMART AdoHcyase UniProtKB/TrEMBL
  AdoHcyase_NAD UniProtKB/TrEMBL
Superfamily-SCOP Formate/glycerate dehydrogenase catalytic domain-like UniProtKB/TrEMBL
  SSF51735 UniProtKB/TrEMBL
UniProt A0A8C2W7G1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2WBW4 ENTREZGENE, UniProtKB/TrEMBL