Atxn1 (ataxin 1) - Rat Genome Database

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Gene: Atxn1 (ataxin 1) Chinchilla lanigera
Analyze
Symbol: Atxn1
Name: ataxin 1
RGD ID: 8829452
Description: ENCODES a protein that exhibits chromatin binding (ortholog); identical protein binding (ortholog); poly(G) binding (ortholog); INVOLVED IN adult locomotory behavior (ortholog); brain development (ortholog); excitatory postsynaptic potential (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); genetic disease (ortholog); neurodegenerative disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear inclusion body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ataxin-1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554839,536,261 - 9,552,321 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554839,159,877 - 9,559,453 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atxn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554839,536,261 - 9,552,321 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554839,159,877 - 9,559,453 (+)NCBIChiLan1.0ChiLan1.0
ATXN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38616,299,112 - 16,761,460 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl616,299,112 - 16,761,491 (-)EnsemblGRCh38hg38GRCh38
GRCh37616,299,343 - 16,761,691 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36616,407,322 - 16,869,700 (-)NCBINCBI36Build 36hg18NCBI36
Build 34616,407,322 - 16,869,700NCBI
Celera617,537,162 - 17,999,561 (-)NCBICelera
Cytogenetic Map6p22.3NCBI
HuRef616,246,641 - 16,707,370 (-)NCBIHuRef
CHM1_1616,301,995 - 16,764,390 (-)NCBICHM1_1
T2T-CHM13v2.0616,171,667 - 16,634,155 (-)NCBIT2T-CHM13v2.0
Atxn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391345,703,231 - 46,118,467 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1345,703,231 - 46,118,484 (-)EnsemblGRCm39 Ensembl
GRCm381345,549,755 - 45,964,991 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1345,549,755 - 45,965,008 (-)EnsemblGRCm38mm10GRCm38
MGSCv371345,650,262 - 46,060,345 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361345,565,865 - 45,975,948 (-)NCBIMGSCv36mm8
Celera1346,630,758 - 47,041,580 (-)NCBICelera
Cytogenetic Map13A5NCBI
cM Map1321.98NCBI
Atxn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81718,943,397 - 19,354,751 (+)NCBIGRCr8
mRatBN7.21718,737,491 - 19,142,360 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1718,737,533 - 19,142,360 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1718,622,877 - 19,027,380 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01720,226,714 - 20,631,212 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01718,550,018 - 18,954,499 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01719,160,986 - 19,533,814 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1719,249,952 - 19,533,814 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01721,184,036 - 21,473,347 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01721,544,083 - 21,559,271 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41724,719,383 - 25,138,270 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13103,267,365 - 103,268,238 (+)NCBI
Celera1718,442,710 - 18,844,739 (+)NCBICelera
Cytogenetic Map17p14NCBI
ATXN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2530,966,019 - 30,995,125 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1626,957,458 - 26,980,693 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0616,155,049 - 16,952,827 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1616,519,331 - 16,978,090 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl616,526,563 - 16,548,566 (-)Ensemblpanpan1.1panPan2
ATXN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13515,458,498 - 15,863,829 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3515,452,135 - 15,649,747 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3515,407,327 - 15,813,549 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03515,554,267 - 15,960,589 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3515,547,891 - 15,745,477 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13515,378,364 - 15,779,653 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03515,430,962 - 15,836,082 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03516,757,017 - 17,163,739 (-)NCBIUU_Cfam_GSD_1.0
Atxn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049469,209,716 - 9,230,696 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365522,505,238 - 2,521,231 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365522,498,711 - 2,521,225 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATXN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl712,301,013 - 12,457,450 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1712,299,938 - 12,730,850 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2712,896,238 - 13,321,905 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATXN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11755,810,621 - 55,832,565 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1755,810,279 - 55,832,472 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604416,382,231 - 16,840,941 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atxn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475610,011,250 - 10,160,469 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247569,770,261 - 10,167,560 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000003156   ⟹   ENSCLAP00000003092
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554839,536,261 - 9,552,321 (+)Ensembl
RefSeq Acc Id: XM_013503811   ⟹   XP_013359265
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554839,159,877 - 9,559,453 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013503812   ⟹   XP_013359266
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554839,159,877 - 9,559,453 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013503813   ⟹   XP_013359267
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554839,258,836 - 9,559,453 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013503814   ⟹   XP_013359268
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554839,258,836 - 9,559,453 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013503815   ⟹   XP_013359269
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554839,198,902 - 9,559,453 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013503816   ⟹   XP_013359270
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554839,159,877 - 9,559,453 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013503817   ⟹   XP_013359271
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554839,198,902 - 9,559,453 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001231022
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554839,159,877 - 9,403,369 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001231023
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554839,159,883 - 9,185,347 (+)NCBI
Sequence:
RefSeq Acc Id: XP_013359266   ⟸   XM_013503812
- UniProtKB: A0A8C2UMI1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013359265   ⟸   XM_013503811
- UniProtKB: A0A8C2UMI1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013359270   ⟸   XM_013503816
- UniProtKB: A0A8C2UMI1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013359269   ⟸   XM_013503815
- UniProtKB: A0A8C2UMI1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013359271   ⟸   XM_013503817
- UniProtKB: A0A8C2UMI1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013359267   ⟸   XM_013503813
- UniProtKB: A0A8C2UMI1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013359268   ⟸   XM_013503814
- UniProtKB: A0A8C2UMI1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000003092   ⟸   ENSCLAT00000003156
Protein Domains
AXH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002212 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003156 ENTREZGENE
  ENSCLAT00000003156.1 UniProtKB/TrEMBL
InterPro Ataxin-1_N UniProtKB/TrEMBL
  ATAXIN1-like UniProtKB/TrEMBL
  Ataxin_AXH_dom UniProtKB/TrEMBL
  Ataxin_AXH_dom_sf UniProtKB/TrEMBL
NCBI Gene Atxn1 ENTREZGENE
PANTHER PTHR13392 UniProtKB/TrEMBL
  PTHR13392:SF5 UniProtKB/TrEMBL
Pfam ATXN-1_C UniProtKB/TrEMBL
  AXH UniProtKB/TrEMBL
PROSITE AXH UniProtKB/TrEMBL
SMART AXH UniProtKB/TrEMBL
Superfamily-SCOP SSF102031 UniProtKB/TrEMBL
UniProt A0A8C2UMI1 ENTREZGENE, UniProtKB/TrEMBL