Acmsd (aminocarboxymuconate semialdehyde decarboxylase)

Gene: Acmsd (aminocarboxymuconate semialdehyde decarboxylase) Chinchilla lanigera

Analyze

Symbol:

Acmsd

Name:

aminocarboxymuconate semialdehyde decarboxylase

RGD ID:

8822344

Description:

ENCODES a protein that exhibits aminocarboxymuconate-semialdehyde decarboxylase activity (ortholog); zinc ion binding (ortholog); INVOLVED IN negative regulation of quinolinate biosynthetic process (ortholog); tryptophan catabolic process (ortholog); PARTICIPATES IN kynurenine metabolic pathway; tryptophan metabolic pathway; ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); genetic disease (ortholog); kidney failure (ortholog); FOUND IN cytosol (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

2-amino-3-carboxymuconate-6-semialdehyde decarboxylase

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955440	2,348,396 - 2,412,706 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955440	2,348,434 - 2,412,706 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Diabetes Mellitus (ISO)

genetic disease (ISO)

kidney failure (ISO)

Puromycin Aminonucleoside Nephrosis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of quinolinate biosynthetic process (ISO)

tryptophan catabolic process (ISO)

Cellular Component

cytosol (ISO)

Molecular Function

aminocarboxymuconate-semialdehyde decarboxylase activity (ISO)

protein binding (ISO)

zinc ion binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

kynurenine metabolic pathway (ISO)

tryptophan metabolic pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Acmsd
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955440	2,348,396 - 2,412,706 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955440	2,348,434 - 2,412,706 (+)	NCBI	ChiLan1.0	ChiLan1.0

ACMSD
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	134,838,616 - 134,902,034 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	134,838,616 - 134,902,034 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	135,596,186 - 135,659,604 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	135,312,656 - 135,376,074 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	135,429,919 - 135,493,332	NCBI
Celera	2	129,309,109 - 129,372,527 (+)	NCBI		Celera
Cytogenetic Map	2	q21.3	NCBI
HuRef	2	127,587,573 - 127,651,049 (+)	NCBI		HuRef
CHM1_1	2	135,600,992 - 135,664,414 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	135,278,873 - 135,342,322 (+)	NCBI		T2T-CHM13v2.0

Acmsd
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	127,657,149 - 127,695,723 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	127,657,150 - 127,695,715 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	127,729,413 - 127,767,564 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	127,729,413 - 127,767,978 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	129,625,990 - 129,664,141 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	129,556,959 - 129,595,110 (+)	NCBI		MGSCv36	mm8
Celera	1	130,370,820 - 130,409,013 (+)	NCBI		Celera
Cytogenetic Map	1	E3	NCBI
cM Map	1	55.8	NCBI

Acmsd
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	41,752,894 - 41,798,427 (+)	NCBI		GRCr8
mRatBN7.2	13	39,200,412 - 39,245,954 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	39,200,314 - 39,245,209 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	41,786,679 - 41,829,829 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	43,074,766 - 43,117,920 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	40,337,153 - 40,381,033 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	44,424,689 - 44,468,734 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	44,424,689 - 44,468,734 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	49,510,444 - 49,553,512 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	40,547,366 - 40,573,698 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	40,561,408 - 40,587,743 (-)	NCBI
Celera	13	39,577,658 - 39,620,559 (+)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

ACMSD
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	40,027,693 - 40,088,834 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	40,042,663 - 40,102,757 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	24,958,661 - 25,019,901 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	138,918,281 - 138,978,407 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	138,918,281 - 138,978,407 (+)	Ensembl	panpan1.1		panPan2

ACMSD
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	37,658,999 - 37,725,426 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	37,659,226 - 37,725,172 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	19	37,899,088 - 37,966,088 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	19	39,104,331 - 39,171,370 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	19	39,104,336 - 39,171,359 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	19	37,746,853 - 37,813,851 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	19	37,907,821 - 37,974,822 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	19	39,142,980 - 39,209,976 (+)	NCBI		UU_Cfam_GSD_1.0

Acmsd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	100,712,913 - 100,760,168 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	40,858,338 - 40,904,807 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	40,858,338 - 40,904,807 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ACMSD
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	17,106,724 - 17,163,899 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	17,121,950 - 17,164,005 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	19,522,142 - 19,538,454 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ACMSD
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	19,063,731 - 19,128,387 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	19,064,115 - 19,129,089 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666061	3,375,719 - 3,440,136 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Acmsd
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624732	34,232,908 - 34,292,898 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624732	34,232,890 - 34,294,195 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005390746	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005390748	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005390749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013517510	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013517511	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01036206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01036207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCQ01033145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000005657 ⟹ ENSCLAP00000005556

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955440	2,348,396 - 2,412,706 (+)	Ensembl

RefSeq Acc Id:

XM_005390746 ⟹ XP_005390803

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955440	2,348,435 - 2,412,706 (+)	NCBI

Sequence:

show sequence

CAGATAGCTATAAAAGGGCTGAGTAAATCAATTAACTCGATGGTTTTCATGGAGATCTCTTGAT
ATAAAAGCTTCTTTTTTGAAACACGTGTCTCCTCTGATCCTGTGAAGATGAAAATTGACATCCA
TAGTCATATTCTACCAAAAGAATGGCCAGATCTAGAAAAGAGATTCGGCTATGGAGGCTGGGTG
AAACTTCAACACCACAGCAAGGGAGAAGCAAAGATGGTAAAAGATGGCAAAGTCTTCAGAGTGG
TCCAAGAGAACTGCTGGGATCCCGAAATTCGTATTAGAGAAATGGATCAGAAAGGAGTGACAGT
ACAAGTTCTGTCCACCGTTCCCATCATGTTTAGCTACTGGGCCAAACCTCATGATACTTTGGAA
CTGTGCCAGTTTTTAAACAACGACCTAGCTGCCACAGTTGCAAGCCATCCCCGGAGGTTTGTGG
GTCTGGGGACATTGCCCATGCAAGCACCAAAGCTGGCCATCAAGGAGATGGAGCGCTGTGTAAA
GGAGTTGGGCTTTCCAGGGGTCCAGATTGGCTCCCACATCAACACATGGGACCTAAATGAGCAG
GAACTCTTCCAGTTCTATGAAGTGGCAGAAAGGTTGAACTGTTGCCTGTTTGTGCATCCCTGGG
ACATGCAGATGGATGGACGAATGGCCAAATACTGGCTCCCGTGGCTTGTAGGAATGCCTGCAGA
GACCACCACAGCTGTTTGTTCAATGATCATGGGTGGGGTGTTTGAGAAGTTTCCGAAACTGAAA
GTATGTTTTGCACATGGAGGTGGTGCTTTCCCTTTCACAGTGGGAAGAATCTCCCATGGATTCA
ACATGCGCCCAGATCTATGTGCCCAGGACAATCCAACTGACCCAAAGAAATACCTAGGCTCCTT
TTACACAGATTCACTAGTTCATGATCCTCGAGCTCTCAAGCTGTTAATGGATGTCATAGGAAAG
GATAAAGTCATCTTGGGAACTGATTACCCCTTCCCGCTAGGTGAGTTGGAACCTGGGAAATTAA
TAGAGTCCATGGAAGAATTTGATGAAGAAACAAAGGATAAACTCAAAGCTGATAATGCTCTGGC
ATTTTTGGGTCTGGAAAGAAAACAATTTGAATGACTGAATTCAAGATAATATTTCACTTTAAAA
ATGTATCACACACATTGCTAAAATCCTATTTGGAATTATTTTGTGAAGAAATAGAATATTCCCA
AATACCCTAAATTATTCCTAACAAAATGATGTATAAGTGTTTTCCTTCTGAAAAGTAGTATATT
ATTACATAGGCAAATCAAAAATTATTTTCCCAATGTCTGTTTAATTAACTTGGAAGAGACAAAA
AATAAAATGTTATTAATGATTTATACAGAGAAAAGTCAA

hide sequence

RefSeq Acc Id:

XM_005390748 ⟹ XP_005390805

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955440	2,356,521 - 2,412,706 (+)	NCBI

Sequence:

show sequence

AGATTCGGCTATGGAGGCTGGGTGAAACTTCAACACCACAGCAAGATATCCTTTTGGAGTTCAA
AGGAAACATTCTTGAGCTGCTAGCTGGAATATAGACATGACTAATGTAGCCCCTGGAGGATTTG
TGGTCTGGGAAAACAGGGAGAAGCAAAGATGGTAAAAGATGGCAAAGTCTTCAGAGTGGTCCAA
GAGAACTGCTGGGATCCCGAAATTCGTATTAGAGAAATGGATCAGAAAGGAGTGACAGTACAAG
TTCTGTCCACCGTTCCCATCATGTTTAGCTACTGGGCCAAACCTCATGATACTTTGGAACTGTG
CCAGTTTTTAAACAACGACCTAGCTGCCACAGTTGCAAGCCATCCCCGGAGGTTTGTGGGTCTG
GGGACATTGCCCATGCAAGCACCAAAGCTGGCCATCAAGGAGATGGAGCGCTGTGTAAAGGAGT
TGGGCTTTCCAGGGGTCCAGATTGGCTCCCACATCAACACATGGGACCTAAATGAGCAGGAACT
CTTCCAGTTCTATGAAGTGGCAGAAAGGTTGAACTGTTGCCTGTTTGTGCATCCCTGGGACATG
CAGATGGATGGACGAATGGCCAAATACTGGCTCCCGTGGCTTGTAGGAATGCCTGCAGAGACCA
CCACAGCTGTTTGTTCAATGATCATGGGTGGGGTGTTTGAGAAGTTTCCGAAACTGAAAGTATG
TTTTGCACATGGAGGTGGTGCTTTCCCTTTCACAGTGGGAAGAATCTCCCATGGATTCAACATG
CGCCCAGATCTATGTGCCCAGGACAATCCAACTGACCCAAAGAAATACCTAGGCTCCTTTTACA
CAGATTCACTAGTTCATGATCCTCGAGCTCTCAAGCTGTTAATGGATGTCATAGGAAAGGATAA
AGTCATCTTGGGAACTGATTACCCCTTCCCGCTAGGTGAGTTGGAACCTGGGAAATTAATAGAG
TCCATGGAAGAATTTGATGAAGAAACAAAGGATAAACTCAAAGCTGATAATGCTCTGGCATTTT
TGGGTCTGGAAAGAAAACAATTTGAATGACTGAATTCAAGATAATATTTCACTTTAAAAATGTA
TCACACACATTGCTAAAATCCTATTTGGAATTATTTTGTGAAGAAATAGAATATTCCCAAATAC
CCTAAATTATTCCTAACAAAATGATGTATAAGTGTTTTCCTTCTGAAAAGTAGTATATTATTAC
ATAGGCAAATCAAAAATTATTTTCCCAATGTCTGTTTAATTAACTTGGAAGAGACAAAAAATAA
AATGTTATTAATGATTTATACAGAGAAAAGTCAA

hide sequence

RefSeq Acc Id:

XM_005390749 ⟹ XP_005390806

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955440	2,348,434 - 2,412,706 (+)	NCBI

Sequence:

show sequence

GCAGATAGCTATAAAAGGGCTGAGTAAATCAATTAACTCGATGGTTTTCATGGAGATCTCTTGA
TATAAAAGCTTCTTTTTTGAAACACGTGTCTCCTCTGATCCTGTGAAGATGAAAATTGACATCC
ATAGTCATATTCTACCAAAAGAATGGCCAGATCTAGAAAAGAGATTCGGCTATGGAGGCTGGGT
GAAACTTCAACACCACAGCAAGGGAGAAGCAAAGATGGTAAAAGATGGCAAAGTCTTCAGAGTG
GTCCAAGAGAACTGCTGGGATCCCGAAATTCGTATTAGAGAAATGGATCAGAAAGGAGTGACAG
TACAAGTTCTGTCCACCGTTCCCATCATGTTTAGCTACTGGGCCAAACCTCATGATACTTTGGA
ACTGTGCCAGTTTTTAAACAACGACCTAGCTGCCACAGTTGCAAGCCATCCCCGGAGGTTTGTG
GGTCTGGGGACATTGCCCATGCAAGCACCAAAGCTGGCCATCAAGGAGATGGAGCGCTGTGTAA
AGGAGTTGGGCTTTCCAGGGGTCCAGATTGGCTCCCACATCAACACATGGGACCTAAATGAGCA
GGAACTCTTCCAGTTCTATGAAGTGGCAGAAAGGTTGAACTGTTGCCTGTTTGTGCATCCCTGG
GACATGCAGATGGATGGACGAATGGCCAAATACTGGCTCCCGTGGCTTGTAGGAATGCCTGCAG
AGACCACCACAGCTGTTTGTTCAATGATCATGGGTGGGGTGTTTGAGAAGTTTCCGAAACTGAA
AGTATGTTTTGCACATGGAGGTGGTGCTTTCCCTTTCACAGTGGGAAGAATCTCCCATGGATTC
AACATGCGCCCAGATCTATGTGCCCAGGACAATCCAACTGACCCAAAGAAATACCTAGGCTCCT
TTTACACAGATTCACTAGTTCATGATCCTCGAGCTCTCAAGCTGTTAATGGATGTCATAGGAAA
GGATAAAGTCATCTTGGGAACTGATTACCCCTTCCCGCTAGGATAAACTCAAAGCTGATAATGC
TCTGGCATTTTTGGGTCTGGAAAGAAAACAATTTGAATGACTGAATTCAAGATAATATTTCACT
TTAAAAATGTATCACACACATTGCTAAAATCCTATTTGGAATTATTTTGTGAAGAAATAGAATA
TTCCCAAATACCCTAAATTATTCCTAACAAAATGATGTATAAGTGTTTTCCTTCTGAAAAGTAG
TATATTATTACATAGGCAAATCAAAAATTATTTTCCCAATGTCTGTTTAATTAACTTGGAAGAG
ACAAAAAATAAAATGTTATTAATGATTTATACAGAGAAAAGTCAA

hide sequence

RefSeq Acc Id:

XM_013517510 ⟹ XP_013372964

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955440	2,348,434 - 2,387,553 (+)	NCBI

Sequence:

show sequence

GCAGATAGCTATAAAAGGGCTGAGTAAATCAATTAACTCGATGGTTTTCATGGAGATCTCTTGA
TATAAAAGCTTCTTTTTTGAAACACGTGTCTCCTCTGATCCTGTGAAGATGAAAATTGACATCC
ATAGTCATATTCTACCAAAAGAATGGCCAGATCTAGAAAAGAGATTCGGCTATGGAGGCTGGGT
GAAACTTCAACACCACAGCAAGGGAGAAGCAAAGATGGTAAAAGATGGCAAAGTCTTCAGAGTG
GTCCAAGAGAACTGCTGGGATCCCGAAATTCGTATTAGAGAAATGGATCAGAAAGGAGTGACAG
TACAAGTTCTGTCCACCGTTCCCATCATGTTTAGCTACTGGGCCAAACCTCATGATACTTTGGA
ACTGTGCCAGTTTTTAAACAACGACCTAGCTGCCACAGTTGCAAGCCATCCCCGGAGGTTTGTG
GGTCTGGGGACATTGCCCATGCAAGCACCAAAGCTGGCCATCAAGGAGATGGAGCGCTGTGTAA
AGGAGTTGGGCTTTCCAGGGGTCCAGATTGGCTCCCACATCAACACATGGGACCTAAATGAGCA
GGAACTCTTCCAGTTCTATGAAGTGGCAGAAAGGTTGAACTGTTGCCTGTTTGTGCATCCCTGG
GACATGCAGATGGATGGACGAATGGCCAAATACTGGCTCCCGTGGCTTGTAGGAATGCCTGCAG
AGACCACCACAGCTGTTTGTTCAATGATCATGGGTGGGGTGTTTGAGAAGTTTCCGAAACTGAA
AGTATGTTTTGCACATGGAGGTGGTGCTTTCCCTTTCACAGTGGGAAGAATCTCCCATGGATTC
AACATGCGCCCAGATCTATGTGCCCAGGACAATCCAACTGACCCAAAGAAATACCTAGGCTCCT
TTTACACAGATTCACTAGTTCATGATCCTCGAGCTCTCAAGCTGTTAATGGATGTCATAGGAAA
GTGAGTAACTTTGCTCCACCATGACTCTCTGACATGATGTTCCCGCCTTGGAGTCAGCTGACCA
AGGACTGAAACCTCTGAAACTGTGAGCCAAAAATAAGTCTCTCCTTCTTGAAATTGAGGATATC
AGGTATTTTGTTCCAGTGACAGGCAAAACACTGATACCTACATATTCGAAGATCCTCAGTGGAT
GCCTAACACCACTGATGTTACCAAATCCTATACAGAAGCATTAAGACACTGTGGCAGTCAATTT
GATAACGAAGATGGCTGCTAAGTGACTAATGGGGATTAATGGTCTGTATATACAGTACAATGTG
TATATGCTGTCTAAAGGGATGTTTTATTTCAGGTTGCACAAAGTAGGACAGTGCAAGATTTTAC
CACACTACTCAGAATGGCATATAACTTAAAACTTATGAAGTGTTTATTTTGGGCATTTTCCATG
TAATATTTCTGAACTGTTATAAACCAAGAGAAACTGAAACTATGGAAAGCAAAACCTCAGATAA
GGGATACTGCTATATCTGATTGAGCTGTGTCTGTACATTGTCTAGCCTCTATGCTGTCCCTATA
GAGATGATAGCTAGCAGCTGGTTGTGACTATGAATTCTTTTGGGTGTGAACGGAAGGTGATGGG
GGAGTATGTAAGTTAAAGGTACAAAGAAGAGAAGCTAAAAGAGTCTTTATGGGTTCTGGACTTC
AACCAATGGAAGCAGAAAGGGGAAAGTAATGGAGAATTGGAGAAAGGGTCATGCATATTACCTC
CTATGGAGCCTAGTACCTCCTAGTATTCTTGGAAATGGCACCACCAAGAGAAAACACCCTTGAC
CCATACAAAGCCTACCCTGCATAATACATCAGCAGTGAAGAATTTTATCAATATCTTTAAGCAA
GTACCTAAGGCAATACACATTGGCCAGGGAACTGAAGCAGAAGAGGAAGAATATGGCAAGTGCC
TCATGGCAACTGGTAGATAGATGAATTGGTGAGCACATGTGAATATTCCTCTAGAAGGGCCCCT
AGAAAAATTGAGAGGGCACTTTGCAAAGGTAATGGCACTAACAGCCTACATTCAAATTATAAAG
GCACGAAGTACCACAATTTGGGCATCAAAAGTAAATGTGACTTCATTTTACGTGACCTCACAGG
CCAGAATCTAGGACATAGCAGCCATATATATTAATAATTTAGGGTTCTCTTTAAAATATTAATG
CTTCTGCATTTTAGTTATATTCACATTAGCAAATTCTCTTTCAGAAGCAATTACAAAATCAAAA
TGACTAAGGAAAGGCCTACCAAGACATTTGGGCTACAATGCAACCAGTCTAGATTAGAGCAAGA
GAGCAGATTTCTGTGGAGGGTGGTATCCAGTAAGGAAAAACATTAAAGTGATGGATAATTTGGT
GTGTTTGAGAGTTGGTAACAATTATCTCCAGACATTAGATAAATCTGTTAATGCTTTAGGAACA
AATCATACATACATTAAAAACTAAGAAAAGGAAATAACTCCAAGAAAACAATCTGTATGGGGGC
AGATAATCATTGTACATTATTTGACTCAGCAGTGAACAACACTTACATTAATAGAAGTATAAAT
ACTAATTATTGCTTTAACTAAAAAAACTCAAGTTATACTGGGAAATTAAAGTGGTTCAGAGTAG
GGGGCTGGGGATTTAGCTCAGCGGCAAAAGCAC

hide sequence

RefSeq Acc Id:

XM_013517511 ⟹ XP_013372965

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955440	2,371,948 - 2,412,706 (+)	NCBI

Sequence:

show sequence

ATGGCAAAGTCTTCAGAGTGGTCCAAGAGAACTGCTGGGATCCCGAAATTCGTATTAGAGAAAT
GGATCAGAAAGGCCAAACCTCATGATACTTTGGAACTGTGCCAGTTTTTAAACAACGACCTAGC
TGCCACAGTTGCAAGCCATCCCCGGAGGTTTGTGGGTCTGGGGACATTGCCCATGCAAGCACCA
AAGCTGGCCATCAAGGAGATGGAGCGCTGTGTAAAGGAGTTGGGCTTTCCAGGGGTCCAGATTG
GCTCCCACATCAACACATGGGACCTAAATGAGCAGGAACTCTTCCAGTTCTATGAAGTGGCAGA
AAGGTTGAACTGTTGCCTGTTTGTGCATCCCTGGGACATGCAGATGGATGGACGAATGGCCAAA
TACTGGCTCCCGTGGCTTGTAGGAATGCCTGCAGAGACCACCACAGCTGTTTGTTCAATGATCA
TGGGTGGGGTGTTTGAGAAGTTTCCGAAACTGAAAGTATGTTTTGCACATGGAGGTGGTGCTTT
CCCTTTCACAGTGGGAAGAATCTCCCATGGATTCAACATGCGCCCAGATCTATGTGCCCAGGAC
AATCCAACTGACCCAAAGAAATACCTAGGCTCCTTTTACACAGATTCACTAGTTCATGATCCTC
GAGCTCTCAAGCTGTTAATGGATGTCATAGGAAAGGATAAAGTCATCTTGGGAACTGATTACCC
CTTCCCGCTAGGTGAGTTGGAACCTGGGAAATTAATAGAGTCCATGGAAGAATTTGATGAAGAA
ACAAAGGATAAACTCAAAGCTGATAATGCTCTGGCATTTTTGGGTCTGGAAAGAAAACAATTTG
AATGACTGAATTCAAGATAATATTTCACTTTAAAAATGTATCACACACATTGCTAAAATCCTAT
TTGGAATTATTTTGTGAAGAAATAGAATATTCCCAAATACCCTAAATTATTCCTAACAAAATGA
TGTATAAGTGTTTTCCTTCTGAAAAGTAGTATATTATTACATAGGCAAATCAAAAATTATTTTC
CCAATGTCTGTTTAATTAACTTGGAAGAGACAAAAAATAAAATGTTATTAATGATTTATACAGA
GAAAAGTCAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005390803	(Get FASTA)	NCBI Sequence Viewer
	XP_005390805	(Get FASTA)	NCBI Sequence Viewer
	XP_005390806	(Get FASTA)	NCBI Sequence Viewer
	XP_013372964	(Get FASTA)	NCBI Sequence Viewer
	XP_013372965	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000005556
	ENSCLAP00000005556.1

RefSeq Acc Id:	XP_005390803 ⟸ XM_005390746
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2UUQ6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKIDIHSHILPKEWPDLEKRFGYGGWVKLQHHSKGEAKMVKDGKVFRVVQENCWDPEIRIREMD QKGVTVQVLSTVPIMFSYWAKPHDTLELCQFLNNDLAATVASHPRRFVGLGTLPMQAPKLAIKE MERCVKELGFPGVQIGSHINTWDLNEQELFQFYEVAERLNCCLFVHPWDMQMDGRMAKYWLPWL VGMPAETTTAVCSMIMGGVFEKFPKLKVCFAHGGGAFPFTVGRISHGFNMRPDLCAQDNPTDPK KYLGSFYTDSLVHDPRALKLLMDVIGKDKVILGTDYPFPLGELEPGKLIESMEEFDEETKDKLK ADNALAFLGLERKQFE hide sequence

RefSeq Acc Id:

XP_005390806 ⟸ XM_005390749

- Peptide Label:

isoform X3

- Sequence:

show sequence

MKIDIHSHILPKEWPDLEKRFGYGGWVKLQHHSKGEAKMVKDGKVFRVVQENCWDPEIRIREMD
QKGVTVQVLSTVPIMFSYWAKPHDTLELCQFLNNDLAATVASHPRRFVGLGTLPMQAPKLAIKE
MERCVKELGFPGVQIGSHINTWDLNEQELFQFYEVAERLNCCLFVHPWDMQMDGRMAKYWLPWL
VGMPAETTTAVCSMIMGGVFEKFPKLKVCFAHGGGAFPFTVGRISHGFNMRPDLCAQDNPTDPK
KYLGSFYTDSLVHDPRALKLLMDVIGKDKVILGTDYPFPLG

hide sequence

RefSeq Acc Id:

XP_005390805 ⟸ XM_005390748

- Peptide Label:

isoform X2

- Sequence:

show sequence

MVKDGKVFRVVQENCWDPEIRIREMDQKGVTVQVLSTVPIMFSYWAKPHDTLELCQFLNNDLAA
TVASHPRRFVGLGTLPMQAPKLAIKEMERCVKELGFPGVQIGSHINTWDLNEQELFQFYEVAER
LNCCLFVHPWDMQMDGRMAKYWLPWLVGMPAETTTAVCSMIMGGVFEKFPKLKVCFAHGGGAFP
FTVGRISHGFNMRPDLCAQDNPTDPKKYLGSFYTDSLVHDPRALKLLMDVIGKDKVILGTDYPF
PLGELEPGKLIESMEEFDEETKDKLKADNALAFLGLERKQFE

hide sequence

RefSeq Acc Id:

XP_013372964 ⟸ XM_013517510

- Peptide Label:

isoform X4

- Sequence:

show sequence

MKIDIHSHILPKEWPDLEKRFGYGGWVKLQHHSKGEAKMVKDGKVFRVVQENCWDPEIRIREMD
QKGVTVQVLSTVPIMFSYWAKPHDTLELCQFLNNDLAATVASHPRRFVGLGTLPMQAPKLAIKE
MERCVKELGFPGVQIGSHINTWDLNEQELFQFYEVAERLNCCLFVHPWDMQMDGRMAKYWLPWL
VGMPAETTTAVCSMIMGGVFEKFPKLKVCFAHGGGAFPFTVGRISHGFNMRPDLCAQDNPTDPK
KYLGSFYTDSLVHDPRALKLLMDVIGK

hide sequence

RefSeq Acc Id:

XP_013372965 ⟸ XM_013517511

- Peptide Label:

isoform X5

- Sequence:

show sequence

MAKSSEWSKRTAGIPKFVLEKWIRKAKPHDTLELCQFLNNDLAATVASHPRRFVGLGTLPMQAP
KLAIKEMERCVKELGFPGVQIGSHINTWDLNEQELFQFYEVAERLNCCLFVHPWDMQMDGRMAK
YWLPWLVGMPAETTTAVCSMIMGGVFEKFPKLKVCFAHGGGAFPFTVGRISHGFNMRPDLCAQD
NPTDPKKYLGSFYTDSLVHDPRALKLLMDVIGKDKVILGTDYPFPLGELEPGKLIESMEEFDEE
TKDKLKADNALAFLGLERKQFE

hide sequence

RefSeq Acc Id:

ENSCLAP00000005556 ⟸ ENSCLAT00000005657

Protein Domains

Amidohydrolase-related

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000003941	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000005657	ENTREZGENE
	ENSCLAT00000005657.1	UniProtKB/TrEMBL
Gene3D-CATH	Metal-dependent hydrolases	UniProtKB/TrEMBL
InterPro	ACMSD	UniProtKB/TrEMBL
	Amidohydro-rel	UniProtKB/TrEMBL
	Metal_Hydrolase	UniProtKB/TrEMBL
NCBI Gene	Acmsd	ENTREZGENE
PANTHER	2-AMINO-3-CARBOXYMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE	UniProtKB/TrEMBL
	PTHR21240	UniProtKB/TrEMBL
Pfam	Amidohydro_2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF51556	UniProtKB/TrEMBL
UniProt	A0A8C2UUQ6	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - SMPDB

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Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - SMPDB