Scnn1g (sodium channel epithelial 1 subunit gamma) - Rat Genome Database

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Gene: Scnn1g (sodium channel epithelial 1 subunit gamma) Chinchilla lanigera
Analyze
Symbol: Scnn1g
Name: sodium channel epithelial 1 subunit gamma (Ensembl:sodium channel epithelial 1 gamma subunit)
RGD ID: 8818814
Description: ENCODES a protein that exhibits ligand-gated sodium channel activity (ortholog); monoatomic ion channel activity (ortholog); sodium channel activity (ortholog); INVOLVED IN cellular response to acidic pH (ortholog); cellular response to aldosterone (ortholog); intracellular sodium ion homeostasis (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal recessive pseudohypoaldosteronism type 1 (ortholog); bronchiectasis 3 (ortholog); FOUND IN apical plasma membrane (ortholog); cell surface (ortholog); external side of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: amiloride-sensitive sodium channel subunit gamma; sodium channel epithelial 1 gamma subunit; sodium channel, non voltage gated 1 gamma subunit; sodium channel, non-voltage-gated 1, gamma subunit
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554931,784,885 - 1,813,205 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554931,787,693 - 1,813,085 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Scnn1g
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554931,784,885 - 1,813,205 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554931,787,693 - 1,813,085 (+)NCBIChiLan1.0ChiLan1.0
SCNN1G
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381623,182,745 - 23,216,883 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1623,182,745 - 23,216,883 (+)EnsemblGRCh38hg38GRCh38
GRCh371623,194,066 - 23,228,204 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361623,101,541 - 23,135,701 (+)NCBINCBI36Build 36hg18NCBI36
Build 341623,101,540 - 23,135,701NCBI
Celera1621,971,795 - 22,005,983 (+)NCBICelera
Cytogenetic Map16p12.2NCBI
HuRef1621,283,200 - 21,317,389 (+)NCBIHuRef
CHM1_11624,204,072 - 24,239,947 (+)NCBICHM1_1
T2T-CHM13v2.01623,458,746 - 23,492,881 (+)NCBIT2T-CHM13v2.0
Scnn1g
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397121,333,643 - 121,367,705 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7121,333,702 - 121,367,698 (+)EnsemblGRCm39 Ensembl
GRCm387121,734,420 - 121,768,482 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7121,734,479 - 121,768,475 (+)EnsemblGRCm38mm10GRCm38
MGSCv377128,878,021 - 128,911,991 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367121,525,655 - 121,559,625 (+)NCBIMGSCv36mm8
Celera7121,627,304 - 121,655,746 (+)NCBICelera
Cytogenetic Map7F2NCBI
cM Map765.07NCBI
Scnn1g
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81185,736,225 - 185,770,099 (+)NCBIGRCr8
mRatBN7.21176,304,942 - 176,338,816 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1176,304,942 - 176,338,816 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1184,638,693 - 184,672,499 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01191,824,639 - 191,858,441 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01184,509,747 - 184,543,391 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01191,704,397 - 191,738,271 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1191,704,311 - 191,738,268 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01198,620,974 - 198,655,013 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41180,555,660 - 180,589,534 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11180,695,574 - 180,729,447 (+)NCBI
Celera1174,023,130 - 174,057,000 (+)NCBICelera
Cytogenetic Map1q36NCBI
SCNN1G
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21824,587,647 - 24,628,257 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11629,115,419 - 29,149,991 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01614,893,631 - 14,928,402 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11623,435,793 - 23,469,969 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1623,435,793 - 23,469,969 (+)Ensemblpanpan1.1panPan2
SCNN1G
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1622,566,568 - 22,593,479 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl622,567,711 - 22,593,503 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha624,133,974 - 24,160,890 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0622,710,568 - 22,737,530 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl622,710,570 - 22,737,607 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1622,514,929 - 22,541,871 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0622,418,178 - 22,445,130 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0622,812,745 - 22,839,705 (-)NCBIUU_Cfam_GSD_1.0
Scnn1g
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344119,830,809 - 119,861,302 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365017,932,703 - 7,958,204 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365017,932,729 - 7,958,146 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCNN1G
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl322,977,947 - 23,013,384 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1322,977,940 - 23,013,384 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2323,444,625 - 23,480,163 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SCNN1G
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1520,860,062 - 20,924,628 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl520,891,416 - 20,924,819 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660688,937,927 - 8,971,502 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Scnn1g
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247828,424,270 - 8,452,824 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247828,424,192 - 8,452,686 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000022003   ⟹   ENSCLAP00000021800
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554931,784,885 - 1,813,205 (+)Ensembl
RefSeq Acc Id: XM_013504874   ⟹   XP_013360328
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554931,787,693 - 1,813,085 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013360328 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000021800
  ENSCLAP00000021800.1
RefSeq Acc Id: XP_013360328   ⟸   XM_013504874
- UniProtKB: A0A8C2W4H8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000021800   ⟸   ENSCLAT00000022003


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014928 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000022003 ENTREZGENE
  ENSCLAT00000022003.1 UniProtKB/TrEMBL
Gene3D-CATH Acid-sensing ion channels like domains UniProtKB/TrEMBL
  YojJ-like UniProtKB/TrEMBL
InterPro ENaC UniProtKB/TrEMBL
  ENaC_chordates UniProtKB/TrEMBL
  ENaC_CS UniProtKB/TrEMBL
NCBI Gene Scnn1g ENTREZGENE
PANTHER AMILORIDE-SENSITIVE SODIUM CHANNEL SUBUNIT GAMMA UniProtKB/TrEMBL
  PTHR11690 UniProtKB/TrEMBL
Pfam ASC UniProtKB/TrEMBL
PRINTS AMINACHANNEL UniProtKB/TrEMBL
PROSITE ASC UniProtKB/TrEMBL
UniProt A0A8C2W4H8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-09-07 Scnn1g  sodium channel epithelial 1 subunit gamma  Scnn1g  sodium channel epithelial 1 gamma subunit  Symbol and/or name change 5135510 APPROVED
2016-08-03 Scnn1g  sodium channel epithelial 1 gamma subunit    sodium channel, non voltage gated 1 gamma subunit  Symbol and/or name change 5135510 APPROVED
2015-08-25 Scnn1g  sodium channel, non voltage gated 1 gamma subunit    sodium channel, non-voltage-gated 1, gamma subunit  Symbol and/or name change 5135510 APPROVED