Itga9 (integrin subunit alpha 9) - Rat Genome Database

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Pathways
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Gene: Itga9 (integrin subunit alpha 9) Chinchilla lanigera
Analyze
Symbol: Itga9
Name: integrin subunit alpha 9
RGD ID: 8791564
Description: ENCODES a protein that exhibits collagen binding (ortholog); integrin binding involved in cell-matrix adhesion (ortholog); laminin binding (ortholog); INVOLVED IN cell adhesion (ortholog); negative regulation of vasoconstriction (ortholog); neutrophil chemotaxis (ortholog); PARTICIPATES IN altered integrin mediated signaling pathway; integrin mediated signaling pathway; pancreatic cancer pathway; ASSOCIATED WITH Brugada syndrome (ortholog); cerebral infarction (ortholog); congenital chylothorax (ortholog); FOUND IN basal plasma membrane (ortholog); integrin alpha9-beta1 complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: integrin alpha-9; integrin, alpha 9
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554214,331,048 - 4,663,092 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554214,331,053 - 4,663,101 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Itga9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554214,331,048 - 4,663,092 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554214,331,053 - 4,663,101 (+)NCBIChiLan1.0ChiLan1.0
ITGA9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38337,452,141 - 37,823,507 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl337,452,115 - 37,823,507 (+)EnsemblGRCh38hg38GRCh38
GRCh37337,493,632 - 37,864,998 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36337,468,817 - 37,836,285 (+)NCBINCBI36Build 36hg18NCBI36
Build 34337,468,816 - 37,836,285NCBI
Celera337,427,381 - 37,795,659 (+)NCBICelera
Cytogenetic Map3p22.2NCBI
HuRef337,453,524 - 37,803,820 (+)NCBIHuRef
CHM1_1337,445,418 - 37,812,994 (+)NCBICHM1_1
T2T-CHM13v2.0337,453,682 - 37,827,665 (+)NCBIT2T-CHM13v2.0
Itga9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399118,435,777 - 118,730,071 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9118,435,758 - 118,730,071 (+)EnsemblGRCm39 Ensembl
GRCm389118,606,709 - 118,901,003 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9118,606,690 - 118,901,003 (+)EnsemblGRCm38mm10GRCm38
MGSCv379118,515,827 - 118,810,121 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369118,455,407 - 118,747,637 (+)NCBIMGSCv36mm8
Celera9119,076,746 - 119,369,133 (+)NCBICelera
Cytogenetic Map9F3NCBI
cM Map970.32NCBI
Itga9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88127,185,244 - 127,493,296 (+)NCBIGRCr8
mRatBN7.28118,307,424 - 118,615,527 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8118,307,381 - 118,613,754 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.08127,271,029 - 127,576,709 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8127,271,289 - 127,572,988 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08126,493,359 - 126,795,566 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48123,526,904 - 123,838,241 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18123,387,039 - 123,857,990 (+)NCBI
Celera8117,492,541 - 117,791,124 (+)NCBICelera
Cytogenetic Map8q32NCBI
ITGA9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2237,404,594 - 37,773,882 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1337,409,358 - 37,778,646 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0337,349,120 - 37,722,572 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1337,635,563 - 38,006,363 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl337,651,395 - 38,006,363 (+)Ensemblpanpan1.1panPan2
CTDSPL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1237,616,264 - 7,760,595 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl237,725,446 - 7,758,067 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha237,687,460 - 7,802,513 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0237,934,233 - 8,049,568 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1237,748,828 - 7,863,990 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0237,889,843 - 8,005,071 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0237,882,182 - 7,997,474 (+)NCBIUU_Cfam_GSD_1.0
Itga9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118193,736,764 - 194,050,174 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647326,876,671 - 27,184,795 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647326,875,337 - 27,188,747 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITGA9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1322,268,503 - 22,655,704 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11322,298,497 - 22,655,717 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21324,631,116 - 24,724,457 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ITGA9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1151,585,811 - 1,961,798 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl151,581,676 - 1,961,435 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606310,313,062 - 10,698,298 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Itga9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477320,341,335 - 20,735,189 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477320,336,975 - 20,735,081 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000005827   ⟹   ENSCLAP00000005726
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554214,331,048 - 4,663,092 (+)Ensembl
RefSeq Acc Id: XM_013513777   ⟹   XP_013369231
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554214,331,053 - 4,663,101 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013369231 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000005726
  ENSCLAP00000005726.1
Reference Protein Sequences
RefSeq Acc Id: XP_013369231   ⟸   XM_013513777
- UniProtKB: A0A8C2UUJ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000005726   ⟸   ENSCLAT00000005827
Protein Domains
Integrin alpha first immunoglubulin-like   Integrin alpha second immunoglobulin-like   Integrin alpha third immunoglobulin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004058 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000005827 ENTREZGENE
  ENSCLAT00000005827.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.130 UniProtKB/TrEMBL
  Bicelle-embedded integrin alpha(iib) transmembrane segment UniProtKB/TrEMBL
  Integrin domains. Chain A, domain 2 UniProtKB/TrEMBL
  ntegrin, alpha v. Chain A, domain 3 UniProtKB/TrEMBL
  ntegrin, alpha v. Chain A, domain 4 UniProtKB/TrEMBL
InterPro FG-GAP UniProtKB/TrEMBL
  Int_alpha_beta-p UniProtKB/TrEMBL
  Integrin_alpha UniProtKB/TrEMBL
  Integrin_alpha-2 UniProtKB/TrEMBL
  Integrin_alpha_C_CS UniProtKB/TrEMBL
  Integrin_alpha_Ig-like_2 UniProtKB/TrEMBL
  Integrin_alpha_Ig-like_3 UniProtKB/TrEMBL
  Integrin_alpha_N UniProtKB/TrEMBL
  Integrin_dom_sf UniProtKB/TrEMBL
NCBI Gene Itga9 ENTREZGENE
PANTHER INTEGRIN ALPHA UniProtKB/TrEMBL
  INTEGRIN ALPHA-9 UniProtKB/TrEMBL
Pfam FG-GAP UniProtKB/TrEMBL
  Integrin_A_Ig_2 UniProtKB/TrEMBL
  Integrin_A_Ig_3 UniProtKB/TrEMBL
  Integrin_alpha2 UniProtKB/TrEMBL
PRINTS INTEGRINA UniProtKB/TrEMBL
PROSITE FG_GAP UniProtKB/TrEMBL
  INTEGRIN_ALPHA UniProtKB/TrEMBL
SMART Int_alpha UniProtKB/TrEMBL
Superfamily-SCOP SSF69179 UniProtKB/TrEMBL
  SSF69318 UniProtKB/TrEMBL
UniProt A0A8C2UUJ3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Itga9  integrin subunit alpha 9    integrin, alpha 9  Symbol and/or name change 5135510 APPROVED