LOC102016571 (cytochrome P450 2W1) - Rat Genome Database

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Gene: LOC102016571 (cytochrome P450 2W1) Chinchilla lanigera
Analyze
Symbol: LOC102016571 (Ensembl: CYP2W1)
Name: cytochrome P450 2W1
RGD ID: 8791210
Description: ENCODES a protein that exhibits all-trans retinal binding (ortholog); all-trans-retinol binding (ortholog); retinoic acid 4-hydroxylase activity (ortholog); INVOLVED IN aflatoxin metabolic process (ortholog); phospholipid metabolic process (ortholog); retinoic acid catabolic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cell surface (ortholog); endoplasmic reticulum lumen (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554608,705,068 - 8,712,121 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554608,705,068 - 8,711,266 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC102016571
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554608,705,068 - 8,712,121 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554608,705,068 - 8,711,266 (+)NCBIChiLan1.0ChiLan1.0
CYP2W1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387983,181 - 989,640 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7983,181 - 989,640 (+)EnsemblGRCh38hg38GRCh38
GRCh3771,022,817 - 1,029,276 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367989,361 - 995,802 (+)NCBINCBI36Build 36hg18NCBI36
Build 347796,234 - 802,517NCBI
Celera7990,578 - 996,997 (+)NCBICelera
Cytogenetic Map7p22.3NCBI
HuRef7939,494 - 945,913 (+)NCBIHuRef
CHM1_171,021,926 - 1,028,345 (+)NCBICHM1_1
T2T-CHM13v2.071,088,177 - 1,094,636 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v271,077,465 - 1,083,884 (+)NCBI
Cyp2w1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395139,338,371 - 139,345,362 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5139,338,372 - 139,342,788 (+)EnsemblGRCm39 Ensembl
GRCm385139,352,616 - 139,359,607 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5139,352,617 - 139,357,033 (+)EnsemblGRCm38mm10GRCm38
MGSCv375139,828,571 - 139,832,987 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365139,606,259 - 139,610,675 (+)NCBIMGSCv36mm8
Celera5136,406,834 - 136,411,079 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map578.44NCBI
Cyp2w1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81220,405,400 - 20,410,282 (-)NCBIGRCr8
mRatBN7.21215,291,552 - 15,296,421 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1215,291,704 - 15,296,421 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01217,382,749 - 17,387,909 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1217,383,159 - 17,387,879 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01219,367,866 - 19,374,746 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41215,792,480 - 15,797,202 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11215,822,407 - 15,827,127 (-)NCBI
Celera1217,045,261 - 17,050,420 (-)NCBICelera
Cytogenetic Map12q11NCBI
CYP2W1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v265,928,225 - 5,935,241 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1754,252,914 - 54,259,930 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v071,140,855 - 1,147,788 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.171,353,510 - 1,369,487 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl71,353,510 - 1,362,781 (+)Ensemblpanpan1.1panPan2
CYP2W1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1615,883,248 - 15,889,508 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl615,881,636 - 15,889,186 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha617,354,512 - 17,362,330 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0616,012,124 - 16,019,942 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl616,012,367 - 16,019,917 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1615,814,985 - 15,822,771 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0615,741,518 - 15,749,310 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0616,029,717 - 16,037,535 (-)NCBIUU_Cfam_GSD_1.0
LOC101970215
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344143,793,867 - 143,807,376 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367541,203,017 - 1,208,131 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367541,203,004 - 1,208,131 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYP2W1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3642,471 - 648,909 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13641,997 - 649,313 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23744,864 - 752,709 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CYP2W1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12820,580,272 - 20,592,771 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2820,582,287 - 20,591,497 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660901,103,793 - 1,111,633 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101698313
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474026,544,715 - 26,549,433 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474026,545,725 - 26,551,906 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000008728   ⟹   ENSCLAP00000008601
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554608,705,068 - 8,709,704 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000008729   ⟹   ENSCLAP00000008602
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554608,706,220 - 8,712,121 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000008730   ⟹   ENSCLAP00000008603
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554608,706,220 - 8,712,121 (+)Ensembl
RefSeq Acc Id: XM_013521223   ⟹   XP_013376677
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554608,705,068 - 8,711,266 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013376677 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000008601
  ENSCLAP00000008601.1
  ENSCLAP00000008602.1
  ENSCLAP00000008603.1
Reference Protein Sequences
RefSeq Acc Id: XP_013376677   ⟸   XM_013521223
- UniProtKB: A0A8C2V0U3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000008603   ⟸   ENSCLAT00000008730
RefSeq Acc Id: ENSCLAP00000008602   ⟸   ENSCLAT00000008729
RefSeq Acc Id: ENSCLAP00000008601   ⟸   ENSCLAT00000008728


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006018 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000008728 ENTREZGENE
  ENSCLAT00000008728.1 UniProtKB/TrEMBL
  ENSCLAT00000008729.1 UniProtKB/TrEMBL
  ENSCLAT00000008730.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.630.10 UniProtKB/TrEMBL
InterPro Cyt_P450 UniProtKB/TrEMBL
  Cyt_P450_CS UniProtKB/TrEMBL
  Cyt_P450_E_grp-I UniProtKB/TrEMBL
  Cyt_P450_sf UniProtKB/TrEMBL
NCBI Gene LOC102016571 ENTREZGENE
PANTHER CYTOCHROME P450 2W1 UniProtKB/TrEMBL
  CYTOCHROME P450 508A4-RELATED UniProtKB/TrEMBL
Pfam p450 UniProtKB/TrEMBL
PRINTS EP450I UniProtKB/TrEMBL
  P450 UniProtKB/TrEMBL
PROSITE CYTOCHROME_P450 UniProtKB/TrEMBL
Superfamily-SCOP SSF48264 UniProtKB/TrEMBL
UniProt A0A8C2V0U3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2V0U7_CHILA UniProtKB/TrEMBL
  A0A8C2V1A6_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 LOC102016571  cytochrome P450 2W1    cytochrome P450 2W1-like  Symbol and/or name change 5135510 APPROVED