Clcn5 (chloride voltage-gated channel 5) - Rat Genome Database

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Gene: Clcn5 (chloride voltage-gated channel 5) Chinchilla lanigera
Analyze
Symbol: Clcn5
Name: chloride voltage-gated channel 5
RGD ID: 8764453
Description: ENCODES a protein that exhibits identical protein binding (ortholog); voltage-gated chloride channel activity (ortholog); INVOLVED IN chloride transport (ortholog); endocytosis (ortholog); renal system process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Bethlem Myopathy 1A (ortholog); congenital disorder of glycosylation type IIm (ortholog); FOUND IN apical part of cell (ortholog); cytosol (ortholog); endosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chloride channel, voltage-sensitive 5; H(+)/Cl(-) exchange transporter 5
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555431,077,007 - 1,250,352 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555431,076,988 - 1,256,352 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Clcn5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555431,077,007 - 1,250,352 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555431,076,988 - 1,256,352 (+)NCBIChiLan1.0ChiLan1.0
CLCN5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X49,922,596 - 50,099,230 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX49,922,596 - 50,099,235 (+)EnsemblGRCh38hg38GRCh38
GRCh37X49,687,206 - 49,863,887 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X49,718,955 - 49,750,632 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X49,537,191 - 49,560,557NCBI
CeleraX53,756,528 - 53,932,992 (+)NCBICelera
Cytogenetic MapXp11.23NCBI
HuRefX47,156,646 - 47,337,277 (+)NCBIHuRef
CHM1_1X49,766,989 - 49,943,526 (+)NCBICHM1_1
T2T-CHM13v2.0X49,238,534 - 49,416,892 (+)NCBIT2T-CHM13v2.0
Clcn5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,020,049 - 7,185,597 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX7,020,049 - 7,185,597 (-)EnsemblGRCm39 Ensembl
GRCm38X7,153,810 - 7,319,358 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,153,810 - 7,319,358 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X6,735,945 - 6,765,840 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X6,316,432 - 6,345,645 (-)NCBIMGSCv36mm8
CeleraX4,285,826 - 4,305,500 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.21NCBI
Clcn5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X17,857,260 - 18,011,844 (+)NCBIGRCr8
mRatBN7.2X15,185,380 - 15,339,977 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX15,185,451 - 15,334,264 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX20,124,321 - 20,150,472 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X19,932,829 - 19,958,980 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X16,197,788 - 16,223,939 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X16,170,585 - 16,196,691 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX16,050,780 - 16,196,789 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X16,955,709 - 16,981,815 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X27,383,769 - 27,409,877 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X27,437,237 - 27,463,346 (+)NCBI
CeleraX15,387,005 - 15,413,019 (+)NCBICelera
RH 3.4 MapX169.21RGD
Cytogenetic MapXq12NCBI
CLCN5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X51,350,269 - 51,512,532 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X51,353,651 - 51,515,909 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X42,137,523 - 42,299,716 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X49,851,472 - 50,013,375 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX49,854,165 - 50,006,363 (+)Ensemblpanpan1.1panPan2
CLCN5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X42,705,789 - 42,860,701 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX42,704,627 - 42,853,812 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX17,082,898 - 17,238,055 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X42,846,347 - 42,999,814 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX42,846,266 - 42,993,780 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X42,830,221 - 42,985,707 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X42,817,844 - 42,972,995 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X42,912,678 - 43,067,849 (+)NCBIUU_Cfam_GSD_1.0
Clcn5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X35,203,152 - 35,361,974 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367211,445,779 - 1,596,814 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367211,552,312 - 1,602,360 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLCN5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX43,613,628 - 43,811,526 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X43,779,016 - 43,809,472 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X48,706,075 - 48,736,547 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLCN5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X46,772,176 - 46,934,886 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX46,772,305 - 46,927,861 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666086358,698 - 521,112 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clcn5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248931,390,344 - 1,577,110 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248931,390,417 - 1,581,457 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000004134   ⟹   ENSCLAP00000004053
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555431,077,007 - 1,250,352 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000004135   ⟹   ENSCLAP00000004054
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555431,225,509 - 1,250,352 (+)Ensembl
RefSeq Acc Id: XM_005411351   ⟹   XP_005411408
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555431,225,509 - 1,256,352 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013508169   ⟹   XP_013363623
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555431,076,988 - 1,256,352 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013508170   ⟹   XP_013363624
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555431,076,988 - 1,256,352 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013508171   ⟹   XP_013363625
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555431,076,988 - 1,256,352 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005411408   ⟸   XM_005411351
- Peptide Label: isoform X3
- UniProtKB: A0A8C2YJV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013363624   ⟸   XM_013508170
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013363623   ⟸   XM_013508169
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013363625   ⟸   XM_013508171
- Peptide Label: isoform X2
- UniProtKB: A0A8C2URC0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000004053   ⟸   ENSCLAT00000004134
RefSeq Acc Id: ENSCLAP00000004054   ⟸   ENSCLAT00000004135
Protein Domains
CBS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002896 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000004134 ENTREZGENE
  ENSCLAT00000004134.1 UniProtKB/TrEMBL
  ENSCLAT00000004135 ENTREZGENE
  ENSCLAT00000004135.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.580.20 UniProtKB/TrEMBL
  3.90.1280.20 UniProtKB/TrEMBL
  Clc chloride channel UniProtKB/TrEMBL
InterPro CBS_dom UniProtKB/TrEMBL
  CBS_dom_sf UniProtKB/TrEMBL
  Cl-channel_core UniProtKB/TrEMBL
  Cl-channel_volt-gated UniProtKB/TrEMBL
  Cl_channel-5 UniProtKB/TrEMBL
NCBI Gene Clcn5 ENTREZGENE
PANTHER CHLORIDE CHANNEL PROTEIN UniProtKB/TrEMBL
  H(+)/CL(-) EXCHANGE TRANSPORTER 5 UniProtKB/TrEMBL
Pfam CBS UniProtKB/TrEMBL
  Voltage_CLC UniProtKB/TrEMBL
PRINTS CLCHANNEL UniProtKB/TrEMBL
  CLCHANNEL5 UniProtKB/TrEMBL
PROSITE CBS UniProtKB/TrEMBL
SMART CBS UniProtKB/TrEMBL
Superfamily-SCOP SSF54631 UniProtKB/TrEMBL
  SSF81340 UniProtKB/TrEMBL
UniProt A0A8C2URC0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YJV9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Clcn5  chloride voltage-gated channel 5    chloride channel, voltage-sensitive 5  Symbol and/or name change 5135510 APPROVED