Ehmt1 (euchromatic histone lysine methyltransferase 1) - Rat Genome Database

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Gene: Ehmt1 (euchromatic histone lysine methyltransferase 1) Chinchilla lanigera
Analyze
Symbol: Ehmt1
Name: euchromatic histone lysine methyltransferase 1
RGD ID: 8749136
Description: ENCODES a protein that exhibits C2H2 zinc finger domain binding (ortholog); histone H3K27 methyltransferase activity (ortholog); histone H3K9 methyltransferase activity (ortholog); INVOLVED IN chromatin organization (ortholog); DNA methylation-dependent heterochromatin formation (ortholog); facultative heterochromatin formation (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); Adams-Oliver Syndrome 5 (ortholog); autistic disorder (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: euchromatic histone-lysine N-methyltransferase 1; histone-lysine N-methyltransferase EHMT1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555135,547,313 - 5,641,499 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555135,491,446 - 5,642,559 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ehmt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555135,547,313 - 5,641,499 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555135,491,446 - 5,642,559 (+)NCBIChiLan1.0ChiLan1.0
EHMT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389137,619,005 - 137,836,127 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9137,618,992 - 137,870,016 (+)EnsemblGRCh38hg38GRCh38
GRCh379140,513,457 - 140,730,579 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369139,725,238 - 139,850,400 (+)NCBINCBI36Build 36hg18NCBI36
Build 349137,881,253 - 138,006,413NCBI
Celera9111,130,415 - 111,256,878 (+)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9109,975,406 - 110,193,755 (+)NCBIHuRef
CHM1_19140,662,174 - 140,878,710 (+)NCBICHM1_1
T2T-CHM13v2.09149,870,687 - 150,093,989 (+)NCBIT2T-CHM13v2.0
Ehmt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39224,680,781 - 24,809,658 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl224,679,940 - 24,809,626 (-)EnsemblGRCm39 Ensembl
GRCm38224,790,769 - 24,919,643 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl224,789,928 - 24,919,614 (-)EnsemblGRCm38mm10GRCm38
MGSCv37224,646,293 - 24,742,591 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36224,612,804 - 24,741,610 (-)NCBIMGSCv36mm8
Celera224,513,068 - 24,641,644 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map216.73NCBI
Ehmt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8327,978,888 - 28,127,178 (-)NCBIGRCr8
mRatBN7.237,580,680 - 7,729,046 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl37,580,683 - 7,729,007 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx310,684,555 - 10,777,264 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0319,270,788 - 19,363,493 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0317,460,616 - 17,553,324 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.031,966,974 - 2,123,858 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl31,960,957 - 2,123,820 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.031,951,004 - 2,106,608 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.433,074,136 - 3,169,921 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.133,074,159 - 3,225,936 (-)NCBI
Celera32,411,864 - 2,558,168 (-)NCBICelera
Cytogenetic Map3p13NCBI
EHMT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2111,508,542 - 1,735,451 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan191,510,875 - 1,737,763 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09108,724,568 - 108,951,077 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19137,699,213 - 137,895,564 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9137,764,950 - 137,895,564 (+)Ensemblpanpan1.1panPan2
EHMT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1948,031,593 - 48,110,954 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl948,032,709 - 48,175,828 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha947,218,499 - 47,362,742 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0948,893,204 - 49,037,678 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl948,893,199 - 49,037,650 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1947,669,581 - 47,813,979 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0947,968,987 - 48,113,126 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0948,015,199 - 48,159,643 (-)NCBIUU_Cfam_GSD_1.0
Ehmt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947202,924,820 - 203,053,478 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936669321,249 - 423,018 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936669321,580 - 450,061 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EHMT1
(Sus scrofa - pig)
No map positions available.
EHMT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112380,041 - 545,333 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12379,943 - 497,033 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660584,899,940 - 5,005,236 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ehmt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624760272,493 - 379,780 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624760271,397 - 463,462 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005408624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005408625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005408626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005408627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005408628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005408629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005408630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005408631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013506658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01066974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01066975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01066976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01066977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01066978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01066979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDF01221034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCLAT00000011763   ⟹   ENSCLAP00000011626
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555135,547,313 - 5,641,499 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000011764   ⟹   ENSCLAP00000011627
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555135,549,689 - 5,641,499 (+)Ensembl
RefSeq Acc Id: XM_005408624   ⟹   XP_005408681
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555135,539,120 - 5,642,559 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005408625   ⟹   XP_005408682
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555135,539,120 - 5,642,559 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005408626   ⟹   XP_005408683
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555135,539,120 - 5,642,559 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005408627   ⟹   XP_005408684
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555135,491,446 - 5,642,559 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005408628   ⟹   XP_005408685
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555135,491,446 - 5,642,559 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005408629   ⟹   XP_005408686
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555135,539,120 - 5,642,559 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005408630   ⟹   XP_005408687
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555135,539,120 - 5,642,559 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005408631   ⟹   XP_005408688
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555135,539,120 - 5,635,780 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506658   ⟹   XP_013362112
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555135,539,120 - 5,612,289 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005408684   ⟸   XM_005408627
- Peptide Label: isoform X4
- UniProtKB: A0A8C2V7Y6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005408685   ⟸   XM_005408628
- Peptide Label: isoform X5
- UniProtKB: A0A8C2V7Y6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005408688   ⟸   XM_005408631
- Peptide Label: isoform X8
- UniProtKB: A0A8C2V7Y6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005408686   ⟸   XM_005408629
- Peptide Label: isoform X6
- UniProtKB: A0A8C2V7Y6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005408687   ⟸   XM_005408630
- Peptide Label: isoform X7
- UniProtKB: A0A8C2V7Y6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005408681   ⟸   XM_005408624
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V7Y6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005408683   ⟸   XM_005408626
- Peptide Label: isoform X3
- UniProtKB: A0A8C2V867 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005408682   ⟸   XM_005408625
- Peptide Label: isoform X2
- UniProtKB: A0A8C2V7Y6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362112   ⟸   XM_013506658
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: ENSCLAP00000011627   ⟸   ENSCLAT00000011764
RefSeq Acc Id: ENSCLAP00000011626   ⟸   ENSCLAT00000011763
Protein Domains
Pre-SET   SET


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008017 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011763 ENTREZGENE
  ENSCLAT00000011763.1 UniProtKB/TrEMBL
  ENSCLAT00000011764 ENTREZGENE
  ENSCLAT00000011764.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
  2.170.270.10 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  EHMT1 UniProtKB/TrEMBL
  EHMT1/EHMT2 UniProtKB/TrEMBL
  EHMT_ZBD UniProtKB/TrEMBL
  Pre-SET_dom UniProtKB/TrEMBL
  SET_dom UniProtKB/TrEMBL
  SET_dom_sf UniProtKB/TrEMBL
NCBI Gene Ehmt1 ENTREZGENE
PANTHER PTHR46307 UniProtKB/TrEMBL
  PTHR46307:SF2 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  Ank_4 UniProtKB/TrEMBL
  EHMT1-2_CRR UniProtKB/TrEMBL
  Pre-SET UniProtKB/TrEMBL
  SET UniProtKB/TrEMBL
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  PRE_SET UniProtKB/TrEMBL
  SET UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  PreSET UniProtKB/TrEMBL
  SET UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
  SSF82199 UniProtKB/TrEMBL
UniProt A0A8C2V7Y6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2V867 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Ehmt1  euchromatic histone lysine methyltransferase 1    euchromatic histone-lysine N-methyltransferase 1  Symbol and/or name change 5135510 APPROVED