LOC102027510 (olfactory receptor 10X1)

Gene: LOC102027510 (olfactory receptor 10X1) Chinchilla lanigera

Analyze

Symbol:

LOC102027510

Name:

olfactory receptor 10X1

RGD ID:

8723745

Description:

ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); parathyroid carcinoma (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955468	10,435,122 - 10,436,054 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

parathyroid carcinoma (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

LOC102027510
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955468	10,435,122 - 10,436,054 (-)	NCBI	ChiLan1.0	ChiLan1.0

OR10X1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	158,578,919 - 158,579,899 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	158,578,919 - 158,579,899 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	158,548,709 - 158,549,689 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	156,815,333 - 156,816,313 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	155,361,781 - 155,362,762	NCBI
Celera	1	131,619,765 - 131,620,745 (-)	NCBI		Celera
Cytogenetic Map	1	q23.1	NCBI
HuRef	1	129,906,479 - 129,907,459 (-)	NCBI		HuRef
CHM1_1	1	159,945,063 - 159,946,043 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	157,716,018 - 157,716,998 (-)	NCBI		T2T-CHM13v2.0

Or10x1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	174,196,485 - 174,197,414 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	174,192,688 - 174,202,038 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	174,368,919 - 174,369,848 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	174,365,122 - 174,374,472 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	176,299,050 - 176,299,979 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	176,205,594 - 176,206,523 (+)	NCBI		MGSCv36	mm8
Celera	1	181,470,248 - 181,471,177 (+)	NCBI		Celera
Cytogenetic Map	1	H3	NCBI
cM Map	1	81.01	NCBI

Or10x1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	88,848,521 - 88,849,450 (+)	NCBI		GRCr8
mRatBN7.2	13	86,316,195 - 86,317,124 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	86,310,881 - 86,318,021 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	88,823,434 - 88,824,363 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	90,223,702 - 90,224,631 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	87,408,445 - 87,409,374 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	92,376,915 - 92,377,844 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	92,376,912 - 92,377,844 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	96,897,151 - 96,898,080 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	90,065,417 - 90,066,346 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	90,254,300 - 90,255,230 (+)	NCBI
Celera	13	85,919,202 - 85,920,131 (+)	NCBI		Celera
Cytogenetic Map	13	q24	NCBI

LOC100982221
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	91,267,830 - 91,268,810 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	91,011,358 - 91,012,338 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	133,937,946 - 133,938,926 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	137,728,627 - 137,729,607 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

OR10X1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	23,146,248 - 23,147,207 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	23,168,798 - 23,169,739 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	23,278,121 - 23,279,062 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	38	23,040,788 - 23,041,729 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	23,575,589 - 23,576,530 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	24,007,060 - 24,008,001 (+)	NCBI		UU_Cfam_GSD_1.0

LOC101956715
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	4,970,311 - 4,971,293 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936740	1,783,220 - 1,784,149 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936740	1,783,217 - 1,784,155 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC100625789
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	4	91,682,918 - 91,683,877 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	99,717,832 - 99,718,791 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103223781
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	5,343,903 - 5,346,708 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	5,345,228 - 5,346,205 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	4,513,998 - 4,514,998 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005400315	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01052084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005400315 ⟹ XP_005400372

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955468	10,435,122 - 10,436,054 (-)	NCBI

Sequence:

show sequence

ATGAAGACCAACCAGACAGTCTTGGGAGAATTCATTCTTCTTGGCTTTTCACTTTACCCACATG
CACAGACATTCCTTTGTGTGATCGTCTTTTGTCTGTACTTTCTCACTCTGGCAGGTAATGCGGC
CATCATGTGTTTAACTTGGGTGGACAGATCTCTCCACACACCCATGTACCTCTTTCTCAGTGCA
CTCTCCTTCTCTGAGACATGCTACATATTAACAATTGTCCCTAAGATGCTGGAAGATCTTCTGA
CCAAGAGCAGAAGCATTTCTGTCATAGGCTGTGGGTTGCAGACATGTTTCTTCCTGGGACTTGG
TGGTACTAACTGTGTCATCCTCACTTTAATGGGCTATGACCGCTTCCTGGCCATCTGCAAACCT
CTCAGATACCCCATTCTAATGACCAATGTTGCATGTGGACAGTTTGTGGCCTCTGCTTGGGTTA
TTGGCTTCCTTATCTCTCTGATAGAAACTACAATGATATTCAGGGCTTCTTTCTGCAGACCCAA
CCTCATCAAACACTTCTTTTGCCACATGCGGGCAGTTGTCAGACTGTCCTGTATAGACAGTGAC
CTCACGGAGTTCATAGTCACAGTGATCTCAATGTCAGGCTTGCTGGGCACATTCCTGCTTATCA
CCCTGACTTATGTGTTCATCCTTTCCACTGTCCTCAGGATCACCTCAGCTGCGGGTAAACAAAA
GGCCTTTTCCACCTGTGCCTCCCACCTCACAGTGGTCATCATCCACTTTGGTTTTGCATCCATT
GTTTATTTGAAGCCAGAATCTTCAGGGGGTGATGACACACTCATTGCCATCCCCTACACTGTTA
TTACCCCTTTCCTCAGCCCCATCATATTCAGCCTTCAGAATAAGGATATGAAGAATGCTTTCAA
AAAGATTTTAGGGAAGACACTTACCATAAAAATATAA

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Protein Sequences


Protein RefSeqs	XP_005400372	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005400372 ⟸ XM_005400315

- Sequence:

show sequence

MKTNQTVLGEFILLGFSLYPHAQTFLCVIVFCLYFLTLAGNAAIMCLTWVDRSLHTPMYLFLSA
LSFSETCYILTIVPKMLEDLLTKSRSISVIGCGLQTCFFLGLGGTNCVILTLMGYDRFLAICKP
LRYPILMTNVACGQFVASAWVIGFLISLIETTMIFRASFCRPNLIKHFFCHMRAVVRLSCIDSD
LTEFIVTVISMSGLLGTFLLITLTYVFILSTVLRITSAAGKQKAFSTCASHLTVVIIHFGFASI
VYLKPESSGGDDTLIAIPYTVITPFLSPIIFSLQNKDMKNAFKKILGKTLTIKI

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Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	LOC102027510	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-08-25	LOC102027510	olfactory receptor 10X1		olfactory receptor 10X1-like	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar