LOC102555623 (uncharacterized LOC102555623) - Rat Genome Database

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Gene: LOC102555623 (uncharacterized LOC102555623) Rattus norvegicus
Analyze
Symbol: LOC102555623
Name: uncharacterized LOC102555623
RGD ID: 7750470
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82229,232,139 - 229,251,293 (+)NCBIGRCr8
mRatBN7.22226,558,532 - 226,578,601 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.02243,312,968 - 243,332,027 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02261,866,633 - 261,873,549 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2218,715,929 - 218,734,900 (+)NCBICelera
Cytogenetic Map2q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102555623
410 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2182171407227171407Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2182171407227171407Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2182171407227171407Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2182171407227171407Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2184165752229165752Rat
1581499Esta2Estrogen-induced thymic atrophy QTL 2thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2189599258226936289Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2189599258234599258Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189599258234599258Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2190613715226808892Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2199341726234244620Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2202446871237938339Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2215377404237938339Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2218414747240841241Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
9587428Epfw6Epididymal fat weight QTL 67.470.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)2223389739249053267Rat
7411555Bw132Body weight QTL 1320.001body mass (VT:0001259)body weight gain (CMO:0000420)2223389739249053267Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005501333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_344706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_344707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_352068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_352069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_591363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_591364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_591365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_600014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_600015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_600016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_600017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XR_005501333
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82229,234,057 - 229,251,293 (+)NCBI
mRatBN7.22226,572,232 - 226,578,599 (+)NCBI
RefSeq Acc Id: XR_005501334
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82229,234,056 - 229,251,293 (+)NCBI
mRatBN7.22226,561,768 - 226,578,600 (+)NCBI
RefSeq Acc Id: XR_005501335
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82229,247,893 - 229,251,293 (+)NCBI
mRatBN7.22226,574,479 - 226,578,600 (+)NCBI
RefSeq Acc Id: XR_010064454
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82229,245,637 - 229,251,293 (+)NCBI
RefSeq Acc Id: XR_010064455
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82229,245,638 - 229,251,293 (+)NCBI
RefSeq Acc Id: XR_352069
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82229,234,056 - 229,251,293 (+)NCBI
mRatBN7.22226,561,768 - 226,578,600 (+)NCBI
Rnor_6.02243,323,755 - 243,332,027 (+)NCBI
Rnor_5.02261,866,633 - 261,873,549 (+)NCBI
Sequence:
RefSeq Acc Id: XR_591363
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82229,232,860 - 229,251,293 (+)NCBI
mRatBN7.22226,559,443 - 226,578,600 (+)NCBI
Rnor_6.02243,313,664 - 243,332,027 (+)NCBI
Sequence:
RefSeq Acc Id: XR_591365
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82229,232,139 - 229,251,293 (+)NCBI
mRatBN7.22226,558,921 - 226,578,599 (+)NCBI
Rnor_6.02243,312,975 - 243,332,027 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-51084 BioCyc
NCBI Gene LOC102555623 ENTREZGENE
PhenoGen LOC102555623 PhenoGen
RNAcentral URS0000CCE42D RNACentral
  URS0000CCE752 RNACentral
  URS0000CCEA07 RNACentral
  URS0000CCF739 RNACentral
  URS0000CD06D3 RNACentral
  URS0000CD083E RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102555623  uncharacterized LOC102555623      Symbol and Name status set to provisional 70820 PROVISIONAL