LOC102555669 (uncharacterized LOC102555669)

Gene: LOC102555669 (uncharacterized LOC102555669) Rattus norvegicus

Analyze

Symbol:

LOC102555669

Name:

uncharacterized LOC102555669

RGD ID:

7746436

Description:

Type:

ncrna (Ensembl: lincRNA)

RefSeq Status:

MODEL

Previously known as:

LOC102555612; uncharacterized LOC102555612

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	98,125,807 - 98,243,536 (-)	NCBI		GRCr8
mRatBN7.2	5	93,079,644 - 93,197,365 (-)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	5	96,242,465 - 96,260,090 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	96,242,600 - 96,244,427 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	100,275,454 - 100,293,057 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	5	91,818,846 - 91,836,314 (-)	NCBI		Celera
Cytogenetic Map	5	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in LOC102555669
903 total Variants

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312671	Scl64	Serum cholesterol level QTL 64		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	68984307	104251008	Rat
2316957	Pur21	Proteinuria QTL 21	6.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	5	59793528	113558156	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	34944474	113558310	Rat
1298070	Scl18	Serum cholesterol level QTL 18	3.7		blood LDL cholesterol amount (VT:0000181)	calculated plasma low density lipoprotein cholesterol level (CMO:0001245)	5	79584860	124584860	Rat
1298086	Bp156	Blood pressure QTL 156			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	84132602	129132602	Rat
6903316	Bw113	Body weight QTL 113	2	0.0103	body mass (VT:0001259)	body weight (CMO:0000012)	5	87765973	132765973	Rat
9589025	Epfw7	Epididymal fat weight QTL 7	20.66	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	5	49463600	94463600	Rat
631527	Tls1	T-lymphoma susceptibility QTL 1	0	0.001	thymus integrity trait (VT:0010555)	post-insult time to onset of T-cell lymphoma (CMO:0001907)	5	90450144	135450144	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	12789751	113558310	Rat
7411601	Foco12	Food consumption QTL 12	19.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
7411561	Bw134	Body weight QTL 134	24	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	49463600	94463600	Rat
7411564	Bw135	Body weight QTL 135		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	87468046	132468046	Rat
7411582	Foco3	Food consumption QTL 3	7.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	9823266	99753708	Rat
1331782	Rf36	Renal function QTL 36	3.296		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	83840598	97059958	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	43726656	129132602	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
1357402	Bw46	Body weight QTL 46	4.47		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	5	68984307	104251008	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	69540295	151018848	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
1358889	Bp261	Blood pressure QTL 261	2.86		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	90067849	128034027	Rat
1358895	Bp254	Blood pressure QTL 254	3.6	0.0003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	58829236	128034027	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
1598846	Bp293	Blood pressure QTL 293	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	79584860	124584860	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	50328551	141643988	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	34730116	104251008	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	55715622	100715622	Rat
61380	Edpm5	Estrogen-dependent pituitary mass QTL 5	4.5	0.92	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	5	68984307	104251008	Rat
61386	Bp49	Blood pressure QTL 49	16.6		cerebrum integrity trait (VT:0010549)	brain infarction volume (CMO:0001013)	5	60293434	98603051	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	59793399	143070159	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55805606	132207589	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31663789	131345958	Rat
2290005	Mcs24	Mammary carcinoma susceptibility QTL 24			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	64719390	109719390	Rat
2303574	Gluco42	Glucose level QTL 42	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	53496719	98496719	Rat
2302381	Bw84	Body weight QTL 84	4.47		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	5	68984307	104251008	Rat
2303615	Vencon7	Ventilatory control QTL 7		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	5	50983895	95983895	Rat
1598859	Cm66	Cardiac mass QTL 66	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	79584860	124584860	Rat
2306971	Anxrr21	Anxiety related response QTL 21	9.47		fear/anxiety-related behavior trait (VT:1000241)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	5	66174080	124160948	Rat
1357396	Bw44	Body weight QTL 44	4.19		body mass (VT:0001259)	body weight (CMO:0000012)	5	68984307	104251008	Rat
1358909	Kidm25	Kidney mass QTL 25	1.87		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	90067849	128034027	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	hemolymphoid system	nervous system	reproductive system	respiratory system
High
Medium
Low			7
Below cutoff	1	1	3	1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_005504811	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005504812	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005504813	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010051850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010051851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010051852	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_592564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_592565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_592566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_601063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_601064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000091679

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	96,242,600 - 96,244,427 (-)	Ensembl

RefSeq Acc Id:

XR_005504811

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	98,169,116 - 98,243,536 (-)	NCBI
mRatBN7.2	5	93,122,979 - 93,197,365 (-)	NCBI

RefSeq Acc Id:

XR_005504812

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	98,169,116 - 98,243,536 (-)	NCBI
mRatBN7.2	5	93,122,979 - 93,197,365 (-)	NCBI

RefSeq Acc Id:

XR_005504813

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	98,169,116 - 98,243,536 (-)	NCBI
mRatBN7.2	5	93,122,979 - 93,197,365 (-)	NCBI

RefSeq Acc Id:

XR_010051850

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	98,125,807 - 98,243,536 (-)	NCBI

RefSeq Acc Id:

XR_010051851

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	98,225,238 - 98,243,536 (-)	NCBI

RefSeq Acc Id:

XR_010051852

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	98,169,116 - 98,243,536 (-)	NCBI

RefSeq Acc Id:

XR_592564

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	98,169,116 - 98,181,677 (-)	NCBI
mRatBN7.2	5	93,122,979 - 93,135,462 (-)	NCBI

Sequence:

show sequence

GACTGTCCTCTGAGAGGCTCTACAAGCAACTAACTGAGACAGACGCGGACACTTTCAGGCAACC
AGTTAACTGAGATCTGGTACTCCTATTGAAGGTTTAGCGGAAGGATTGAAGGTCTCAGGAAGAT
ATGTCAAAGAGAAGGCAGAATGACTTTAAGGGCCAGAGCACATAGAAGATACTAAGAAAATATT
GTCTTCTGGAGACAACAAAACTGTCACGCTCAGAAAATCACAGAGACTGTATTCTTCATCCATT
GGCGCCTTCAGTCAGTTTCCCTCAGAGAAGAAAGAATCCCATTTGGTACCACCTCACCCTGGGA
CATTTAGTTCTAGCTCACTGAGGTCCAACAGACAGTCCTGGTAGGGAAGGAGATCCAATGACAG
ACAAAAGAGTGCCAGGCAAGAGCCTAGCATCTCTGCCTAAGGAGAGGCTCTAACAGCAGCTGAC
TGAGAAAGATGCAGATACTTACAGCCAACCATTGGACTGA

hide sequence

RefSeq Acc Id:

XR_592565

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	98,225,238 - 98,243,536 (-)	NCBI
mRatBN7.2	5	93,176,562 - 93,197,365 (-)	NCBI
Rnor_6.0	5	96,242,465 - 96,260,090 (-)	NCBI

Sequence:

show sequence

CCTCACATTATACTTCAACAACATGTCTGCCTAAACAAGCTCTGAAGAAGGACAACACCAATAG
AAATGTTAATGCGGATAGGAGACTCTCAAGGGGACCCACTAAAGGACAAAAACTACAGGCAACT
AAGAAACTGAAAGAAATTTCAACAAAGCAATTCCAATATAAATATACTATAGTCCTATAGGCCC
ACAAGAGACTGAACTGTTGTCCACAATATACTGAGCCCAGTAGGAGAGGGAGTCAAGATGCTTC
ATTTTTACTTGAACCAATACTACCTAAAGGTGAAAGATGACAAGACATGAGTAAATTGCTAAAG
ACCCAGAAAGACCAGAAAGACAGCATCAGGACCTCCTACATGACTACTAGATGCAGAAACCAAG
AACCAAATGATTACGACAGATTGCAGACAACTGGGACAGAAACGAGTTGTTCACTTAGAGGCAC
TACAATTAGCGTGCCCAAGAGACCACGAAGTAACCGAGAATGAGAGTAATACCTATTCAAGTCT
CTTGAAACTCAATAATGGGAACTAACTGAAAGAAGAATTCTTACATCTTGAATTGGAAATGAGA
ATAAGTTTGTTATTGGTAAAGAGAAGAAAGAATATATATGGTTCACGAACAGAATATAACTAGA
AATCCTGTGTGAGTAGAAGTGTTGATGCACATCTAAGATCAGAAAAACAGCATCAGCACTGTGC
TGTTTCAAAACGTATTGTTTTGAGAAAGAAAATGCTCTAATAGATTTTTAATGTGATTTCATTT
ATACTATAAAACAGTATAT

hide sequence

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-40930	BioCyc
Ensembl Genes	ENSRNOG00000056560	Ensembl
NCBI Gene	LOC102555669	ENTREZGENE
PhenoGen	LOC102555669	PhenoGen
RatGTEx	ENSRNOG00000056560	RatGTEx
RNAcentral	URS0000CCE9DC	RNACentral
	URS0000CCEBE5	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	LOC102555669	uncharacterized LOC102555669	LOC102555612	uncharacterized LOC102555612	Data merged from RGD:7752983	737654	PROVISIONAL
2013-12-18	LOC102555669	uncharacterized LOC102555669			Symbol and Name status set to provisional	70820	PROVISIONAL
2013-12-18	LOC102555612	uncharacterized LOC102555612			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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