LOC102555562 (uncharacterized LOC102555562)

Gene: LOC102555562 (uncharacterized LOC102555562) Rattus norvegicus

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Symbol:

LOC102555562

Name:

uncharacterized LOC102555562

RGD ID:

7746419

Description:

Type:

ncrna

RefSeq Status:

MODEL

Previously known as:

LOC102548589; uncharacterized LOC102548589

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	80,909,779 - 80,912,298 (-)	NCBI		GRCr8
mRatBN7.2	17	76,000,569 - 76,003,218 (-)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	17	79,516,009 - 79,519,424 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	17	81,145,715 - 81,148,526 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	17	75,372,524 - 75,375,937 (-)	NCBI		Celera
Cytogenetic Map	17	q12.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in LOC102555562
13 total Variants

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
724549	Niddm56	Non-insulin dependent diabetes mellitus QTL 56		0.03	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	31990784	76990784	Rat
1354663	Bvd5	Brain ventricular dilatation QTL 5	3.51	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	31990784	81292925	Rat
2301412	Kidm40	Kidney mass QTL 40		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	37479847	82479847	Rat
2317054	Aia12	Adjuvant induced arthritis QTL 12	4.24		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	38281509	83281509	Rat
2317060	Aia26	Adjuvant induced arthritis QTL 26	3.22		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	17	38281509	83281509	Rat
1598871	Memor5	Memory QTL 5	5.3		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	17	40540041	80387013	Rat
1358295	Aocep1	Aortic cell protein QTL 1	6.1	0.00000071	thoracic aorta cellular protein amount (VT:0010598)	aortic cell percentage	17	40990005	85990005	Rat
7411575	Bw140	Body weight QTL 140	30.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	48560935	86533673	Rat
8694181	Bw151	Body weight QTL 151	4.36	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	48560935	86533673	Rat
2317038	Ginf3	Gastrointestinal inflammation QTL 3	2.89	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	17	49920154	86533673	Rat
2303580	Gluco49	Glucose level QTL 49	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	17	50040271	86533673	Rat
4889894	Eae33	Experimental allergic encephalomyelitis QTL 33	5.2	0.0001	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	50909099	86022412	Rat
1354588	Bvd4	Brain ventricular dilatation QTL 4	5.31	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	53498828	82479847	Rat
2302365	Gluco40	Glucose level QTL 40	4.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	57246843	82046127	Rat
7488963	Bp369	Blood pressure QTL 369		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	59005649	77910000	Rat
2317045	Aia11	Adjuvant induced arthritis QTL 11	4.06		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	60781426	86533673	Rat
7411577	Bw141	Body weight QTL 141		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	62619516	86533673	Rat
631502	Cm26	Cardiac mass QTL 26	3.71		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	65703580	81153923	Rat
1300129	Rf25	Renal function QTL 25	3.03		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	17	71003325	81153923	Rat
12904736	Cm121	Cardiac mass QTL 121		0.043	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	71774621	82479847	Rat

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_001834346	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001834347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001841965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001841966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_596863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_598216	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_001841965

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	80,909,779 - 80,912,298 (-)	NCBI
mRatBN7.2	17	76,000,569 - 76,003,218 (-)	NCBI
Rnor_6.0	17	79,516,009 - 79,519,424 (-)	NCBI

Sequence:

show sequence

CAGAGGACACCCTTGGATGTGACTCTGGGAGCCATCTACCTTGCTCTTCTGACAGGATGTGGAA
CTTGCTGGCTAGGCTGCACTATATGGCCAGGGAACCTCAAGCGCCTGCCTGTCTCTCCCACGTT
GGCACTGGGGTTATAAACACAGTGATCCATTTCTCTATGGGAGTTGGAGATCGAACTCACCTTC
TCACACTTGCAAGGCAAATGCTTTAACCACCAAGCCATCTACCCAGGCCTCTGGCCCCGTTTTT
AAATGGCCTTATTCCTTTGTGATTCGTTTGTATTTCTGTATATCTGCTAATCTTATACACCTTC
TAAAGATGATAATCATTGGGATTAGGGCTAAGACTAATCCACTATGACTTTATTTTGAGCATCT
GTCACTGCAGTTGGAGTCTCAAATAGCTTTGGGGGAATAATAAATAGTCTTAGAAAAGTACAAA
GAAAAGTGGAATTGGGGGGAATAAAGGAAGAACTTTATCATAAATTCACCATAAATTCATCACT
TGCATTTGCTTTCCTCTTGCAGGCACATGCTCACAGACTATACTTAAGCTAAGGCAGCTACGAG
GTCATAATCATATCTGTGCTCTTTCACTGGCTGAAACATCTACATATGGCACCTGACTGCTCCA
AATCTGGCAGTGTGATACAGTGAGGGAGCCTGGTGTAAATCCTGGTCCTGCCACTTGATGAGCG
TATCACGGACGAGGTCAATGTAGTGGTATGATTTGGAATGTATACTCTGATCTTAAGTGGATCA
GGTGTGTGAACTTGGCCTTTATTGGCTGGCAACATTCATCTTTGGGGAAGAGACCATGGGAAAA
GAAGAGAATCAAGAGAATCGGGTCATGCTTGAATCTCACTGAGAAAGCAAAATAGACATCAGGA
ACCTGCAAGGATGATGTCAGCGAAGACTCCTAGCAACGTGGGACAAGGAACCGGACAACACTTC
CAGTGGAGGGCTGGGGCACCAACTCAGCCACAAAACTTTCGACCCACACATTGTCCTGCCTACA
AATGTACAGAGGCATTTGGAATTGGAAAGAAAGAGCTGTAACAGTGTCTCTGCTTTCCAGTTAC
AAGAAGGACATTAAGAGATAACGGATCAACTGTGGAAGGATGCTGGTGTTCTAAATGTCAGCAG
AGCCACGGCAGCACAGAAACCTAAAGGCAACACATTCCAGAGAAGGCACCACCTTTCAAAAGCT
ACCACGGAAGTCAACATGGTTAGTCGATACCCACGGATCAGCTGTTAAGAACCTTCCTGAAGGC
TGTGTCTCAAGTTTTCCCTAATTTCATCCTTACTCTTATGAAATAAATGGACTCATCTCATTGT
TGGTCGAAAGTTAATGAGGCAGACCTCCAACGAAGCCCAGTGTTAAAATGGCAGCAATTTCTTA
AAGAGAAGATTGGCCAAAGAGATGGTTCAGTGGTTAGGAGCACTTACTGCTCTTGTAGGGGGCT
CCTAGTACCCACACATTGGCTCACAAACATCTGTAATTCCAGTCCCAGGAGATCTGGCTTCTGG
AGGCATCAGTCATGCAGACGGAGCACAGATACACATGGAGGCAAACGCACAAAACAAAAATAAA
ACT

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RefSeq Acc Id:

XR_001841966

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	80,909,779 - 80,912,298 (-)	NCBI
mRatBN7.2	17	76,000,569 - 76,003,218 (-)	NCBI
Rnor_6.0	17	79,516,009 - 79,519,424 (-)	NCBI

Sequence:

show sequence

CAGAGGACACCCTTGGATGTGACTCTGGGAGCCATCTACCTTGCTCTTCTGACAGGATGTGGAA
CTTGCTGGCTAGGCTGCACTATATGGCCAGGGAACCTCAAGCGCCTGCCTGTCTCTCCCACGTT
GGCACTGGGGTTATAAACACAGTGATCCATTTCTCTATGGGAGTTGGAGATCGAACTCACCTTC
TCACACTTGCAAGGCAAATGCTTTAACCACCAAGCCATCTACCCAGGCCTCTGGCCCCGTTTTT
AAATGGCCTTATTCCTTTGTGATTCGTTTGTATTTCTGTATATCTGCTAATCTTATACACCTTC
TAAAGATGATAATCATTGGGATTAGGGCTAAGACTAATCCACTATGACTTTATTTTGAGCATCT
GTCACTGCAGTTGGAGTCTCAAATAGCTTTGGGGGAATAATAAATAGTCTTAGAAAAGTACAAA
GAAAAGTGGAATTGGGGGGAATAAAGGAAGAACTTTATCATAAATTCACCATAAATTCATCACT
TGCATTTGCTTTCCTCTTGCAGGCACATGCTCACAGACTATACTTAAGCTAAGGCAGCTACGAG
GTCATAATCATATCTGTGCTCTTTCACTGGCTGAAACATCTACATATGGCACCTGACTGCTCCA
AATCTGGCAGTGTGATACAGTGAGGGAGCCTGGTGTAAATCCTGGTCCTGCCACTTGATGAGCG
TATCACGGACGAGGTCAATGTAGTGGTATGATTTGGAATGTATACTCTGATCTTAAGTGGATCA
GGTGTGTGAACTTGGCCTTTATTGGCTGGCAACATTCATCTTTGGGGAAGAGACCATGGGAAAA
GAAGAGAATCAAGAGAATCGGGTCATGCTTGAATCTCACTGAGAAAGCAAAATAGACATCAGGA
ACCTGCAAGGATGATGTCAGCGAAGACTCCTAGCAACGTGGGACAAGGAACCGGACAACACTTC
CAGTGGAGGGCTGGGGCACCAACTCAGCCACAAAACTTTCGACCCACACATTGTCCTGCCTACA
AATGTACAGAGGCATTTGGAATTGGAAAGAAAGAGCTGTAACAGTGTCTCTGCTTTCCAGTTAC
AAGAAGGACATTAAGAGATAACGGATCAACTGTGGAAGGATGCTGGTGTTCTAAATGTCAGCAG
AGCCACGGCAGCACAGAAACCTAAAGGCAACACATTCCAGAGAAGGCACCACCTTTCAAAAGGA
GGCCAAGGCAGGAAAATCCCCTACCACGGAAGTCAACATGGTTAGTCGATACCCACGGATCAGC
TGTTAAGAACCTTCCTGAAGGCTGTGTCTCAAGTTTTCCCTAATTTCATCCTTACTCTTATGAA
ATAAATGGACTCATCTCATTGTTGGTCGAAAGTTAATGAGGCAGACCTCCAACGAAGCCCAGTG
TTAAAATGGCAGCAATTTCTTAAAGAGAAGATTGGCCAAAGAGATGGTTCAGTGGTTAGGAGCA
CTTACTGCTCTTGTAGGGGGCTCCTAGTACCCACACATTGGCTCACAAACATCTGTAATTCCAG
TCCCAGGAGATCTGGCTTCTGGAGGCATCAGTCATGCAGACGGAGCACAGATACACATGGAGGC
AAACGCACAAAACAAAAATAAAACT

hide sequence

RefSeq Acc Id:

XR_596863

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	80,909,779 - 80,912,298 (-)	NCBI
mRatBN7.2	17	76,000,569 - 76,003,218 (-)	NCBI
Rnor_6.0	17	79,516,009 - 79,519,424 (-)	NCBI

Sequence:

show sequence

CAGAGGACACCCTTGGATGTGACTCTGGGAGCCATCTACCTTGCTCTTCTGACAGGATGTGGAA
CTTGCTGGCTAGGCTGCACTATATGGCCAGGGAACCTCAAGCGCCTGCCTGTCTCTCCCACGTT
GGCACTGGGGTTATAAACACAGTGATCCATTTCTCTATGGGAGTTGGAGATCGAACTCACCTTC
TCACACTTGCAAGGCAAATGCTTTAACCACCAAGCCATCTACCCAGGCCTCTGGCCCCGTTTTT
AAATGGCCTTATTCCTTTGTGATTCGTTTGTATTTCTGTATATCTGCTAATCTTATACACCTTC
TAAAGATGATAATCATTGGGATTAGGGCTAAGACTAATCCACTATGACTTTATTTTGAGCATCT
GTCACTGCAGTTGGAGTCTCAAATAGCTTTGGGGGAATAATAAATAGTCTTAGAAAAGTACAAA
GAAAAGTGGAATTGGGGGGAATAAAGGAAGAACTTTATCATAAATTCACCATAAATTCATCACT
TGCATTTGCTTTCCTCTTGCAGGCACATGCTCACAGACTATACTTAAGCTAAGGCAGCTACGAG
GTCATAATCATATCTGTGCTCTTTCACTGGCTGAAACATCTACATATGGCACCTGACTGCTCCA
AATCTGGCAGTGTGATACAGTGAGGGAGCCTGGTGTAAATCCTGGTCCTGCCACTTGATGAGCG
TATCACGGACGAGGTCAATGTAGTGGTATGATTTGGAATGTATACTCTGATCTTAAGTGGATCA
GGTGTGTGAACTTGGCCTTTATTGGCTGGCAACATTCATCTTTGGGGAAGAGACCATGGGAAAA
GAAGAGAATCAAGAGAATCGGGTCATGCTTGAATCTCACTGAGAAAGCAAAATAGACATCAGGA
ACCTGCAAGGATGATGTCAGCGAAGACTCCTAGCAACGTGGGACAAGGAACCGGACAACACTTC
CAGTGGAGGGCTGGGGCACCAACTCAGCCACAAAACTTTCGACCCACACATTGTCCTGCCTACA
AATGTACAGAGGCATTTGGAATTGGAAAGAAAGAGCTGTAACAGTGTCTCTGCTTTCCAGTTAC
AAGAAGGACATTAAGAGATAACGGATCAACTGTGGAAGGATGCTGGTGTTCTAAATGTCAGCAG
AGCCACGGCAGCACAGAAACCTAAAGGCAACACATTCCAGAGAAGGCACCACCTTTCAAAAGGA
GGCCAAGGCAGGAAAATCCCGTGAGCATCTTGGATAGCATCTGATATTCTAAGGGGGTGGGGAG
GAGATAAGAAGGTTCATTATTCTAACACCATTGAGATCACCGTGTCATTGATCTAAAGGATGCA
ATATTTTCATGTATCAAGTACTACACTCCTCTGAGGCATTGGCTGCTTCAATTAGCAGAGGCGG
AAGTAGCTACTGTTGGTTACTTAAATTCATCTGAGTAAGCGAGGAAGAAGGAGGACTTGAACAT
GAACTGGGTCACATTAAAGGTCAACAGAACAACAAACTAAACCAGAAAGTGCAGAAGTTAGGAC
TAAACGGAGACTACACAGGGTCAGAATTTTCTGCACCAGCACGAGGATATAGGGGAAATAGCAA
CAGCTGAGTAATGTACACTTGAATTCGCTGTTACATTTGGTCCTGCAGCTACCACGGAAGTCAA
CATGGTTAGTCGATACCCACGGATCAGCTGTTAAGAACCTTCCTGAAGGCTGTGTCTCAAGTTT
TCCCTAATTTCATCCTTACTCTTATGAAATAAATGGACTCATCTCATTGTTGGTCGAAAGTTAA
TGAGGCAGACCTCCAACGAAGCCCAGTGTTAAAATGGCAGCAATTTCTTAAAGAGAAGATTGGC
CAAAGAGATGGTTCAGTGGTTAGGAGCACTTACTGCTCTTGTAGGGGGCTCCTAGTACCCACAC
ATTGGCTCACAAACATCTGTAATTCCAGTCCCAGGAGATCTGGCTTCTGGAGGCATCAGTCATG
CAGACGGAGCACAGATACACATGGAGGCAAACGCACAAAACAAAAATAAAACT

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Additional Information

External Database Links

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-8617	BioCyc
NCBI Gene	LOC102555562	ENTREZGENE
PhenoGen	LOC102555562	PhenoGen
RNAcentral	URS0000CCE403	RNACentral
	URS0000CCF960	RNACentral
	URS0000CD054F	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	LOC102555562	uncharacterized LOC102555562	LOC102548589	uncharacterized LOC102548589	Data merged from RGD:7717242	737654	PROVISIONAL
2013-12-18	LOC102555562	uncharacterized LOC102555562			Symbol and Name status set to provisional	70820	PROVISIONAL
2013-12-18	LOC102548589	uncharacterized LOC102548589			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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