LOC102553576 (uncharacterized LOC102553576) - Rat Genome Database

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Gene: LOC102553576 (uncharacterized LOC102553576) Rattus norvegicus
Analyze
Symbol: LOC102553576
Name: uncharacterized LOC102553576
RGD ID: 7738559
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81934,120,554 - 34,182,830 (-)NCBIGRCr8
mRatBN7.21917,948,039 - 18,008,876 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1917,946,982 - 18,006,848 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01923,351,021 - 23,388,970 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01934,341,133 - 34,352,896 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1917,858,481 - 17,896,028 (-)NCBICelera
Cytogenetic Map19p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102553576
291 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124688055Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127355345Rat
631678Cm9Cardiac mass QTL 94.270.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)19128982497Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032318023069265Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
61407Scl12Serum cholesterol level QTL 120.001blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)191392640130303727Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)191511459834521833Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000094524
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1917,946,982 - 17,986,902 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097495
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1917,948,254 - 17,986,902 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000101117
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1917,946,982 - 18,006,848 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000118859
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1917,947,039 - 17,974,901 (-)Ensembl
RefSeq Acc Id: XR_005496993
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81934,120,554 - 34,182,737 (-)NCBI
mRatBN7.21917,948,039 - 18,008,876 (-)NCBI
RefSeq Acc Id: XR_005496994
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81934,120,554 - 34,182,830 (-)NCBI
mRatBN7.21917,948,039 - 18,008,876 (-)NCBI
RefSeq Acc Id: XR_010060117
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81934,120,554 - 34,182,805 (-)NCBI
RefSeq Acc Id: XR_010060118
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81934,120,554 - 34,182,798 (-)NCBI
RefSeq Acc Id: XR_010060119
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81934,120,554 - 34,182,795 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-6291 BioCyc
Ensembl Genes ENSRNOG00000069560 Ensembl
NCBI Gene LOC102553576 ENTREZGENE
PhenoGen LOC102553576 PhenoGen
RatGTEx ENSRNOG00000069560 RatGTEx
RNAcentral URS0000CCF61B RNACentral
  URS0000CCF8A7 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102553576  uncharacterized LOC102553576      Symbol and Name status set to provisional 70820 PROVISIONAL