LOC102551333 (uncharacterized LOC102551333)

Gene: LOC102551333 (uncharacterized LOC102551333) Rattus norvegicus

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Symbol:

LOC102551333

Name:

uncharacterized LOC102551333

RGD ID:

7737437

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	48,915,851 - 48,932,814 (+)	NCBI		GRCr8
mRatBN7.2	12	43,255,624 - 43,267,196 (+)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	12	49,048,596 - 49,074,222 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	12	50,825,255 - 50,829,150 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	12	44,853,258 - 44,877,478 (+)	NCBI		Celera
Cytogenetic Map	12	q16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in LOC102551333
68 total Variants

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
737979	Pia22	Pristane induced arthritis QTL 22	53.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	1	44465750	Rat
634351	Apr5	Acute phase response QTL 5	6.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	12	1	44503507	Rat
2302042	Pia38	Pristane induced arthritis QTL 38	3.5	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	1	44503507	Rat
634350	Apr4	Acute phase response QTL 4	6		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	1172005	46172005	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	5564495	46669029	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564498	46669029	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	6107579	46669029	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	7196730	46669029	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	9603277	46669029	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	10474137	46669029	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	10474137	46669029	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	11073825	45055165	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	12351619	46669029	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	12812385	46669029	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	12812385	46669029	Rat
1549902	Bp269	Blood pressure QTL 269			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	13182736	46669029	Rat
1549912	Bp268	Blood pressure QTL 268			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	13182736	46669029	Rat
2302060	Pia37	Pristane induced arthritis QTL 37	6.1	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	13198157	46669029	Rat
631560	Apr1	Acute phase response QTL 1	6.1		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	19144362	46669029	Rat
61324	Eae5	Experimental allergic encephalomyelitis QTL 5	14		nervous system integrity trait (VT:0010566)	percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)	12	19610870	46669029	Rat
7411643	Foco20	Food consumption QTL 20		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	20328819	46669029	Rat
1300175	Cm5	Cardiac mass QTL 5	3.78		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	28064433	45899022	Rat
1600386	Calcic2	Intracellular calcium level QTL 2		0.001	platelet physiology trait (VT:0005464)	platelet intracellular calcium level (CMO:0000922)	12	28064433	46669029	Rat
1300162	Bp188	Blood pressure QTL 188	3.19		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	32103174	45899022	Rat

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_001840717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001840718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001840719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001840720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001845718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001845719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001845720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001845721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005492063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005492067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005492068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005492069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010056582	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010056583	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010056584	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010056585	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010056586	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010056587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010056588	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010056589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010056590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010056591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010056592	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_590863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_590864	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_590868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_595388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_595389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_595393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_005492063

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	48,916,455 - 48,926,992 (+)	NCBI
mRatBN7.2	12	43,255,861 - 43,264,136 (+)	NCBI

RefSeq Acc Id:

XR_005492067

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	48,916,113 - 48,926,992 (+)	NCBI
mRatBN7.2	12	43,255,624 - 43,267,196 (+)	NCBI

RefSeq Acc Id:

XR_005492068

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	48,915,851 - 48,926,992 (+)	NCBI
mRatBN7.2	12	43,255,624 - 43,258,205 (+)	NCBI

RefSeq Acc Id:

XR_005492069

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	48,916,113 - 48,926,992 (+)	NCBI
mRatBN7.2	12	43,255,624 - 43,264,136 (+)	NCBI

RefSeq Acc Id:

XR_010056582

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	48,915,851 - 48,926,992 (+)	NCBI

RefSeq Acc Id:

XR_010056583

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	48,916,455 - 48,926,992 (+)	NCBI

RefSeq Acc Id:

XR_010056584

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	48,916,113 - 48,926,992 (+)	NCBI

RefSeq Acc Id:

XR_010056585

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	48,916,455 - 48,926,992 (+)	NCBI

RefSeq Acc Id:

XR_010056586

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	48,916,474 - 48,926,992 (+)	NCBI

RefSeq Acc Id:

XR_010056587

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	48,916,474 - 48,926,992 (+)	NCBI

RefSeq Acc Id:

XR_010056588

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	48,916,474 - 48,926,992 (+)	NCBI

RefSeq Acc Id:

XR_010056589

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	48,916,474 - 48,926,992 (+)	NCBI

RefSeq Acc Id:

XR_010056590

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	48,916,113 - 48,932,814 (+)	NCBI

RefSeq Acc Id:

XR_010056591

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	48,916,113 - 48,926,992 (+)	NCBI

RefSeq Acc Id:

XR_010056592

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	48,916,113 - 48,926,992 (+)	NCBI

RefSeq Acc Id:

XR_595388

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	48,916,113 - 48,930,289 (+)	NCBI
mRatBN7.2	12	43,255,624 - 43,267,196 (+)	NCBI
Rnor_6.0	12	49,048,596 - 49,064,181 (+)	NCBI

Sequence:

show sequence

TACCCATACCACCTGCATGGAGCTCCTTCCTGTTAGCTTTCTTACCTGTGTCCTCTAGCACCTC
CCTGAGACCCCGAGCACAATCGGGGTCAAGCTCCACATTCTGTCTAAGGTTCCATGACCTGCCC
CACCCCTCCTTCTGTGGGGAGATGTCAACAGTCCAAGGGCCCCACTGTGATACTCTTACGAAGG
GTGGCAGCTGCTCAGAGGAATAGGCATCCCACGGACCCTCCTCACCAGCACTCGGCTTCCGGCA
CTGCGCTATTCTCTGGAAAGATAACTACCCATAGTCCTCTGGTGCGTCCTGAACACTCAGTTGG
AGGAAGATTCTGCCTGAGGAGGCAGTGCGAAGAGCCTGGGGTCTGATGCCCCAGTGGGCGCGCC
ACGAAGCTTCACCCCATCACAAGCTCAGAACATCTTGAGCAAGTTGCCTCAGTTTCCCATCTGG
AGGGTGGGTCAGCAGCCTGAAGCTTAAGTCGCAATGACCGTCAGCCAGTGAAGGTTTGCCAGGA
GCCTCCTGACTGCTTCCCACACGGGCTTGAAATGGATGCTAAGGACGACAGACACCATGCTCAG
CCCCAAATGGGACATCTGCATCACCCAGGAGTCACTGAACAAGAGAAGGTAGAACTTCATGGAT
CGCACGGTTGTCCCCTTAGTCACCTGCCTTCACGCCCTTGACTCAGTCCCCACGCCGGGTCTCT
ACTGGACATAACTACCAGGATGGGTCACTCAAGACATCATCAGAGGAGCCTCTTTGTATGGCCA
ACTGGTGCAGAAGATTTCATCAGGAGACAGTGGAGCCGGGGGAGCGGAGCTGAGCAGATAGGCT
ACAACAGTTGCCCATCCTGTCCCACTGTGACACAACCCAGAGGCTGGAGAATTTATGTGAAAAA
CACTTACTATCTCTAGAATCTGGAACGTCTGACATCGAGGGTGCAGTGGTAACCAGTCTGGCCC
AGACTATCATCCCATAGCGCCTCCAGGTGAGAGAGAGCAGGCTCACTCTACCTCACATCAACCC
ACCGCCACAGCATCCCTTTGTGACAGCCGCACTGTCAGAGAGAACTCCCCGGAAACACCCCACG
TCTCGGCCTAATGAGGTACTGCAAATTACAATCCCAACCCACACGCCTTGGGGAACTCCACTCA
CCCACAGCCACCTCGAAGAGGCAGCCACCCTGTCAGAGCGAGCCGGGAAGCCTCCCTGTGCAAC
GGTTCTAGTTTCAGACCAATGTCGGGAGCCAGCGGGTAAGTCTTACACCCAGTAGCAGAGTTCC
CGGACAGGGTCCCTGGTTCCACGTCCTGCAGTAACCTGTCCCAAGAGGCATC

hide sequence

RefSeq Acc Id:

XR_595389

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	48,916,113 - 48,926,992 (+)	NCBI
mRatBN7.2	12	43,255,624 - 43,264,136 (+)	NCBI
Rnor_6.0	12	49,048,596 - 49,053,022 (+)	NCBI

Sequence:

show sequence

TACCCATACCACCTGCATGGAGCTCCTTCCTGTTAGCTTTCTTACCTGTGTCCTCTAGCACCTC
CCTGAGACCCCGAGCACAATCGGGGTCAAGCTCCACATTCTGTCTAAGGTTCCATGACCTGCCC
CACCCCTCCTTCTGTGGGGAGATGTCAACAGTCCAAGGGCCCCACTGTGATACTCTTACGAAGG
GTGGCAGCTGCTCAGAGGAATAGGCATCCCACGGACCCTCCTCACCAGCACTCGGCTTCCGGCA
CTGCGCTATTCTCTGGAAAGATAACTACCCATAGTCCTCTGGTGCGTCCTGAACACTCAGTTGG
AGGAAGATTCTGCCTGAGGAGGCAGTGCGAAGAGCCTGGGGTCTGATGCCCCAGTGGGCGCGCC
ACGAAGCTTCACCCCATCACAAGCTCAGAACATCTTGAGCAAGTTGCCTCAGTTTCCCATCTGG
AGGGTGGGTCAGCAGCCTGAAGCTTAAGTCGCAATGACCGTCAGCCAGTGAAGGTTTGCCAGGA
GCCTCCTGACTGCTTCCCACACGGGCTTGAAATGGATGCTAAGGACGACAGACACCATGCTCAG
CCCCAAATGGGACATCTGCATCACCCAGGAGTCACTGAACAAGAGAAGATGAGAGGCCCAAGCG
TCGAGGAACTCAGGCCAATCCCCAGTGTAGAAAGCTGCACAGTCACGTTCAAATGCCACTCCAC
CTGACTGGGAACCTGTTTCCTTCCCACCATACCTGTCAAACAAGTGGACTCACTCGGAGCTCCA
GTGCTGAGAGCAGGTGGGGCCCCCTCAAGGGAGCTTCTGCTGGCTCTGGCCACAGCCCACTGGA
TGGACAGATGGGTGAATGGGCAGACAGATGGACATACGGACGGACAGAGGCCAGCTGCTTCACT
CTGCTCTAATCACCAGGCCCCTCGGCGGACTCGGTAAATGCCCCGCTGCTGCTGAGCCGAAGGC
TTTCAGGGCCTGCCTGTCACCGTGTTTTACAGCCCTCTTGTTGAAGAGCGGAATCTGTATTGAT
TTCAGAACAACTCAAGCTGTAAATTACTGGCCGCGATCGGCTTGGTAACCCTGAGATGAGAATC
TATTGACTGGACCGGGGGCTTAAATCTAATTATCGTCCCAGGAAAACCATTGGCAGAGCTGCTC
AATGCCTGTGCGGAAGAGAACAGTTAAACAGCCCAGGGCTACGTGGGGGGTGGGGGTGGGGCAG
AGATCTAGAACGATCCGGGGTCTCTGCGGAGCCTAAGAAACTGCCTTGGCCACCAATCGATTGA
CCTTGAGTCACTTCTGTAATTACCAACGGCGATGTTACTACGATAGCGTGGTGCCCCATGGCTC
TGGGGCCTGGGCACCTCATGCAGCCTGTTGTTCAGCTTCCTCAAACCAGTTTCTTCATCTCTAC
ATAGAGGGAGCCTTGGTGCATTTCTACCTGTACCTCAGGAAGGAGAGAAAACCGCCAGCCATGG
GAGCGGCTTCGCCCAAGGGCACACAGCTACCTCGGAATGCAGACCTTAAACCGGTCCCTCACTG
CTGGGTGGCTCAATGGTTAGGGGTGCCTGCCTGCGTGCGGTTACCGGCACCCTGTGCGGTGGCT
CACAGTCACCTGGACGTGAGGCGGCGTGCTGGCCTTGACAAGAACGTCATCCATGGGCTTCTAT
ATCTGAACGCTGGGTAGCTCAGACTGGAGCTGTTTGAAAGGGTTAGAAGGGTTCGGGGGTGTTG
CTGGTTGGAGGGAGTCTGTCACTGGGGTTAGGCTTTGAGGTTTTGAAGGGTGAATGCCAATCAC
AGGGTGTCTCTCTCTGACTACAGGTCAGGACGTAGCTCCCAGCCACTGCTCCGTTGCACCATGG
GCCCTGACATGATAGTAGCAGACTAAGCGTCCGAAACTGTAACACACACATGTACACA

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Additional Information

External Database Links

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-18898	BioCyc
NCBI Gene	LOC102551333	ENTREZGENE
PhenoGen	LOC102551333	PhenoGen
RNAcentral	URS0000CCEB33	RNACentral
	URS0000CCEFD6	RNACentral
	URS0000CCF4C6	RNACentral
	URS0000CCFDAB	RNACentral
	URS0000CCFFB0	RNACentral
	URS0000CD0610	RNACentral
	URS0000CD08B5	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-12-18	LOC102551333	uncharacterized LOC102551333			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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