Fam177b (family with sequence similarity 177 member B) - Rat Genome Database

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Gene: Fam177b (family with sequence similarity 177 member B) Rattus norvegicus
Analyze
Symbol: Fam177b
Name: family with sequence similarity 177 member B
RGD ID: 7728997
Description: Orthologous to human FAM177B (family with sequence similarity 177 member B); INTERACTS WITH (-)-epigallocatechin 3-gallate (ortholog); arsane (ortholog); arsenic atom (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC102551887; protein FAM177B-like
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81397,435,189 - 97,441,261 (-)NCBIGRCr8
mRatBN7.21394,904,128 - 94,909,688 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.013101,664,561 - 101,667,878 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.013100,873,033 - 100,876,350 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1394,433,891 - 94,437,208 (-)NCBICelera
Cytogenetic Map13q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Fam177b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81397,435,189 - 97,441,261 (-)NCBIGRCr8
mRatBN7.21394,904,128 - 94,909,688 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.013101,664,561 - 101,667,878 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.013100,873,033 - 100,876,350 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1394,433,891 - 94,437,208 (-)NCBICelera
Cytogenetic Map13q26NCBI
FAM177B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381222,737,202 - 222,751,004 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1222,737,202 - 222,751,004 (+)EnsemblGRCh38hg38GRCh38
GRCh371222,910,544 - 222,924,346 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361220,977,181 - 220,990,625 (+)NCBINCBI36Build 36hg18NCBI36
Celera1196,129,726 - 196,143,178 (+)NCBICelera
Cytogenetic Map1q41NCBI
HuRef1193,584,941 - 193,598,390 (+)NCBIHuRef
CHM1_11224,183,624 - 224,197,067 (+)NCBICHM1_1
T2T-CHM13v2.01221,970,958 - 221,984,766 (+)NCBIT2T-CHM13v2.0
Gm34287
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391183,048,094 - 183,051,132 (+)NCBIGRCm39GRCm39mm39
GRCm381183,266,530 - 183,269,568 (+)NCBIGRCm38GRCm38mm10GRCm38
Celera1190,259,348 - 190,276,838 (-)NCBICelera
Cytogenetic Map1H5NCBI
FAM177B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2126,567,806 - 26,583,601 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1126,521,212 - 26,537,025 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01198,410,332 - 198,424,308 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11203,423,977 - 203,437,540 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1203,433,254 - 203,437,394 (+)Ensemblpanpan1.1panPan2
FAM177B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13816,995,745 - 17,031,004 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3817,001,892 - 17,005,401 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3817,052,708 - 17,122,631 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03817,042,431 - 17,130,797 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13817,048,042 - 17,118,042 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03817,396,896 - 17,466,900 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03817,692,458 - 17,762,653 (+)NCBIUU_Cfam_GSD_1.0
Fam177b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934454,705,069 - 54,708,870 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493652638,604 - 41,478 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM177B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1011,491,455 - 11,501,712 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11011,491,364 - 11,501,865 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21013,762,097 - 13,772,518 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM177B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1256,821,067 - 6,825,770 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl256,821,873 - 6,825,383 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660557,058,880 - 7,073,610 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Fam177b
38 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137402391897213863Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1374862117101339893Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1380753256106807694Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_063272664   ⟹   XP_063128734
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81397,435,189 - 97,441,261 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063128734 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_063128734   ⟸   XM_063272664


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:7728997 AgrOrtholog
BioCyc Gene G2FUF-17045 BioCyc
NCBI Gene LOC102551887 ENTREZGENE
PhenoGen Fam177b PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-18 Fam177b  family with sequence similarity 177 member B  LOC102551887  protein FAM177B-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-12-18 LOC102551887  protein FAM177B-like      Symbol and Name status set to provisional 70820 PROVISIONAL