LOC102554815 (uncharacterized LOC102554815) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC102554815 (uncharacterized LOC102554815) Rattus norvegicus
Analyze
Symbol: LOC102554815
Name: uncharacterized LOC102554815
RGD ID: 7724322
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82049,316,052 - 49,380,802 (-)NCBIGRCr8
mRatBN7.22047,680,402 - 47,798,219 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2047,679,707 - 47,798,211 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.02049,243,673 - 49,301,952 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02050,896,018 - 50,934,264 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2052,207,896 - 52,258,596 (+)NCBICelera
Cytogenetic Map20q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102554815
1669 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202510672254435887Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202510672254435887Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202520973454435887Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202924438854435887Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000104411
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2047,790,585 - 47,798,211 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2047,679,707 - 47,686,264 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000110695
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2047,679,707 - 47,798,211 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000110802
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2047,679,707 - 47,798,211 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000114510
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2047,790,585 - 47,798,211 (-)Ensembl
RefSeq Acc Id: XR_005497762
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82049,316,052 - 49,380,802 (-)NCBI
mRatBN7.22047,740,650 - 47,798,219 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-3295 BioCyc
Ensembl Genes ENSRNOG00000067389 Ensembl, ENTREZGENE
NCBI Gene LOC102554815 ENTREZGENE
PhenoGen LOC102554815 PhenoGen
RatGTEx ENSRNOG00000067389 RatGTEx
RNAcentral URS0000CCE3D2 RNACentral
  URS0000CCE406 RNACentral
  URS0000CCE9EB RNACentral
  URS0000CD0379 RNACentral
  URS0000CD0588 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102554815  uncharacterized LOC102554815      Symbol and Name status set to provisional 70820 PROVISIONAL