LOC102550211 (disks large homolog 5-like) - Rat Genome Database

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Gene: LOC102550211 (disks large homolog 5-like) Rattus norvegicus
Analyze
Symbol: LOC102550211
Name: disks large homolog 5-like
RGD ID: 7677163
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC102554581; LOC498471; LOC685872; LOC685904; LOC688507; similar to Spetex-2C protein; similar to Spetex-2F protein; uncharacterized protein LOC102550211
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81520,278,248 - 20,283,830 (-)NCBIGRCr8
mRatBN7.21517,737,057 - 17,742,754 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1517,737,313 - 17,895,341 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0155,771,821 - 5,853,414 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0159,847,802 - 9,852,176 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41519,690,662 - 19,703,025 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1517,551,057 - 17,556,641 (+)NCBICelera
Cytogenetic Map15p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102550211
353 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)colorectal tumor number (CMO:0001794)15226636822711984Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15226636822711984Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151448116528469888Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000061522   ⟹   ENSRNOP00000058240
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1517,737,313 - 17,742,676 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119223   ⟹   ENSRNOP00000088841
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1517,737,313 - 17,895,341 (-)Ensembl
RefSeq Acc Id: XM_006251692   ⟹   XP_006251754
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81520,278,248 - 20,283,830 (-)NCBI
mRatBN7.21517,737,059 - 17,742,754 (-)NCBI
Rnor_6.0155,771,821 - 5,777,266 (+)NCBI
Rnor_5.0159,847,802 - 9,852,176 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_006251754 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000058240
  ENSRNOP00000058240.4
  ENSRNOP00000088841.1
Reference Protein Sequences
RefSeq Acc Id: XP_006251754   ⟸   XM_006251692
- UniProtKB: D3ZNN4 (UniProtKB/TrEMBL),   A0A8I6GGM8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000058240   ⟸   ENSRNOT00000061522
RefSeq Acc Id: ENSRNOP00000088841   ⟸   ENSRNOT00000119223
Protein Domains
Disks large homolog 5 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZNN4-F1-model_v2 AlphaFold D3ZNN4 1-166 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-14248 BioCyc
Ensembl Genes ENSRNOG00000062980 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000061522.4 UniProtKB/TrEMBL
  ENSRNOT00000119223.1 UniProtKB/TrEMBL
InterPro DUF622 UniProtKB/TrEMBL
NCBI Gene LOC102550211 ENTREZGENE
PANTHER ENSMUSG00000072602 PROTEIN-RELATED UniProtKB/TrEMBL
  SPEER/SPETEX UniProtKB/TrEMBL
Pfam Takusan UniProtKB/TrEMBL
PhenoGen LOC102550211 PhenoGen
RatGTEx ENSRNOG00000062980 RatGTEx
UniProt A0A8I6GGM8 ENTREZGENE, UniProtKB/TrEMBL
  D3ZNN4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 LOC102550211  disks large homolog 5-like  LOC102554581  disks large homolog 5-like  Data merged from RGD:7658004 737654 PROVISIONAL
2015-07-29 LOC102550211  disks large homolog 5-like  LOC688507  similar to Spetex-2F protein  Data merged from RGD:1587672 737654 PROVISIONAL
2015-07-29 LOC102550211  disks large homolog 5-like  LOC685904  similar to Spetex-2F protein  Data merged from RGD:1587870 737654 PROVISIONAL
2015-07-29 LOC102550211  disks large homolog 5-like  LOC685872  similar to Spetex-2C protein  Data merged from RGD:1589014 737654 PROVISIONAL
2015-07-29 LOC102554581  disks large homolog 5-like  LOC498471  similar to Spetex-2F protein  Data merged from RGD:1591957 737654 PROVISIONAL
2013-12-18 LOC102550211  disks large homolog 5-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-12-18 LOC102554581  disks large homolog 5-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC498471  similar to Spetex-2F protein      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC685872  similar to Spetex-2C protein      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC685904  similar to Spetex-2F protein      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC688507  similar to Spetex-2F protein      Symbol and Name status set to provisional 70820 PROVISIONAL