LOC102554419 (uncharacterized LOC102554419)

Gene: LOC102554419 (uncharacterized LOC102554419) Rattus norvegicus

Analyze

Symbol:

LOC102554419

Name:

uncharacterized LOC102554419

RGD ID:

7669836

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	85,358,139 - 85,367,274 (+)	NCBI		GRCr8
mRatBN7.2	16	78,661,538 - 78,664,549 (+)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	16	83,999,674 - 84,008,389 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	16	83,457,591 - 83,466,255 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	16	76,455,838 - 76,464,631 (+)	NCBI		Celera
Cytogenetic Map	16	q12.5	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in LOC102554419
9 total Variants

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	380245	80345693	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor depth of invasion (CMO:0001888)	16	17696791	82635055	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor depth of invasion (CMO:0001888)	16	17696791	82635055	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17696791	82635055	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17696791	82635055	Rat
1578768	Stresp22	Stress response QTL 22	2.8		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	16	35288870	80288870	Rat
2293690	Bss45	Bone structure and strength QTL 45	5.13	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	16	37752156	82752156	Rat
2300163	Bmd64	Bone mineral density QTL 64	5.3	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	16	37752156	82752156	Rat
7205510	Activ5	Activity QTL 5	3.78	0.00028	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	42396345	84729064	Rat
8694429	Bw164	Body weight QTL 164	5	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	16	52726464	84729064	Rat
8694364	Abfw7	Abdominal fat weight QTL 7	12.22	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	16	52726464	84729064	Rat
7411648	Foco22	Food consumption QTL 22	15	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	52726464	84729064	Rat
631525	Pia14	Pristane induced arthritis QTL 14	4.4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	16	55711087	83402471	Rat

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_005495121	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005495122	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010058505	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010058506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010058507	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_341272	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_360652	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_596555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_596556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_596557	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_597698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_597699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_597700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_005495121

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	85,358,644 - 85,367,274 (+)	NCBI
mRatBN7.2	16	78,661,558 - 78,664,549 (+)	NCBI

RefSeq Acc Id:

XR_005495122

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	85,358,644 - 85,367,274 (+)	NCBI
mRatBN7.2	16	78,661,538 - 78,664,549 (+)	NCBI

RefSeq Acc Id:

XR_010058505

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	85,358,139 - 85,367,274 (+)	NCBI

RefSeq Acc Id:

XR_010058506

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	85,358,644 - 85,367,274 (+)	NCBI

RefSeq Acc Id:

XR_010058507

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	85,358,644 - 85,367,274 (+)	NCBI

RefSeq Acc Id:

XR_596555

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	85,358,644 - 85,367,274 (+)	NCBI
mRatBN7.2	16	78,661,558 - 78,664,549 (+)	NCBI
Rnor_6.0	16	83,999,698 - 84,002,650 (+)	NCBI

Sequence:

show sequence

CTGAACCTCTGAACTTGTAAGGCAGCTCCAATGAAATTTTGTCCTTTATAAAACTCGCATTGGT
CATGGTGTCTTTCCATGGCAGTAAAACCCCTAACTAAGACCGATGGGTTTCATTAACACTTCCA
AGCCTGGGCATTTTGACCCAAGCAGATGCAGATTCTGTCCAGGCGTCCTACTGTGTGCCTCTGT
GCCCAGCAGAAAAGGAAGAGAAATGGGTTCTTCCACTTGAGGTGACAAATTTCTGTTTTTGTTT
CTGTTTTTCTTTTTAATGTTTATTATTTTCCAGCCCCAACATGAGCCCTGGGAATATAAGATGA
ATGTCATGTCGTCCCTTCCTGAAGAGGCTGAAGGGAGCAAGGTGAACCCAATGTGCACAGAACA
AATGCACTTTGCCCAGGTCTTCAGGCTGTCACTGCACTCTGGCGTGCACTTTCTGTTTTGATGA
GTCACTGCAGGTTTCCTTTTCCCCCTATATTTCTTTGAGGAGGCAGGTGCAATTTAATATTTGT
CCATTTAAAATGTTTCATTGTTTATAACAAATAAAAATCACACACATTTACAATGTCTCACCAA
ATGTATCGTTTTTTGTAATAAGAACCCTTTAACAATGTAGCCATCTTGAAGGAGGCAAACTGCT
GAGTGGGTAGAAGGCTCCGCTGTTAGGAACACGGGCTGCTCTTCCAGAGGGCATCTCAGGAGCA
TCTGGGATTTCAGCCTAAGAGATCTGACACCCTCTCCTGGCTCCCTCAGGCACCAGGCATTCAT
GCGGTGTACGGACGTACAGCATAACTACAGACATTTCTGCAGTGGAACGAAAGCAAACTCAGCC
TCTTAGCTGCCTTTCTCTAGTATCTCATTGCAGCAACATGAAGCAAACACTGATGGACTTCAGC
TCTCCATTTCTGAGATGATGCCCGTGGATGCTTACTGTAGCCTCCTGACCTTTGTGTTTCTGTG
TGGAGCAGCAAGTTACTACCATATACATCTACACAATGGAATATTACTC

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Additional Information

External Database Links

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-10633	BioCyc
NCBI Gene	LOC102554419	ENTREZGENE
PhenoGen	LOC102554419	PhenoGen
RNAcentral	URS0000CCED0D	RNACentral
	URS0000CCF09C	RNACentral
	URS0000CCF0FA	RNACentral
	URS0000CCF34D	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-12-18	LOC102554419	uncharacterized LOC102554419			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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