Gene: LOC102550062 (uncharacterized LOC102550062) Rattus norvegicus |
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Analyze |
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Symbol: |
LOC102550062 |
Name: |
uncharacterized LOC102550062 |
RGD ID: |
7658560 |
Description: |
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Type: |
ncrna
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RefSeq Status: |
MODEL |
Latest Assembly: |
mRatBN7.2 - mRatBN7.2 Assembly |
Position: |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 6 | 122,397,108 - 122,553,109 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 6 | 116,762,814 - 116,822,512 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | Rnor_6.0 | 6 | 121,478,861 - 121,537,656 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_5.0 | 6 | 130,703,401 - 130,761,899 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | Celera | 6 | 114,343,439 - 114,402,312 (-) | NCBI | | Celera | | | Cytogenetic Map | 6 | q32 | NCBI | | | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
QTLs in Region (mRatBN7.2)
731173 | Uae22 | Urinary albumin excretion QTL 22 | 10.1 | | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 6 | 65531555 | 140994061 | Rat | 2290393 | Uae37 | Urinary albumin excretion QTL 37 | | 0.0001 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 6 | 65531555 | 140994061 | Rat | 70196 | BpQTLcluster7 | Blood pressure QTL cluster 7 | 6.82 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 6 | 72202632 | 117202632 | Rat | 724536 | Uae7 | Urinary albumin excretion QTL 7 | 3.5 | | urine albumin amount (VT:0002871) | urine albumin level (CMO:0000130) | 6 | 72202632 | 130729475 | Rat | 1331799 | Bp211 | Blood pressure QTL 211 | 3.66407 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 6 | 72202632 | 130919985 | Rat | 1581550 | Pur8 | Proteinuria QTL 8 | | | urine total protein amount (VT:0000032) | urine total protein excretion rate (CMO:0000756) | 6 | 72227641 | 130729205 | Rat | 1581563 | Uae33 | Urinary albumin excretion QTL 33 | | | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 6 | 72227641 | 130729205 | Rat | 738034 | Anxrr5 | Anxiety related response QTL 5 | 5.9 | | exploratory behavior trait (VT:0010471) | percentage of entries into a discrete space in an experimental apparatus (CMO:0000961) | 6 | 84130881 | 129130881 | Rat | 10054138 | Gmadr3 | Adrenal mass QTL 3 | 3.68 | 0.00045 | adrenal gland mass (VT:0010420) | both adrenal glands wet weight (CMO:0000164) | 6 | 85140138 | 130140138 | Rat | 10054123 | Srcrt6 | Stress Responsive Cort QTL 6 | 2.5 | 0.0043 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 6 | 85140138 | 130140138 | Rat | 724513 | Uae14 | Urinary albumin excretion QTL 14 | 6.5 | | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 6 | 85311061 | 133478515 | Rat | 1300076 | Glom8 | Glomerulus QTL 8 | 7 | 0.000000009 | kidney glomerulus morphology trait (VT:0005325) | count of superficial glomeruli directly contacting the kidney surface (CMO:0001001) | 6 | 86894788 | 131894788 | Rat | 2303624 | Vencon5 | Ventilatory control QTL 5 | 4.45 | | respiration trait (VT:0001943) | minute ventilation (CMO:0000132) | 6 | 88047916 | 133047916 | Rat | 1331725 | Bp212 | Blood pressure QTL 212 | 3.52475 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 6 | 93701310 | 128713626 | Rat | 61414 | Pia3 | Pristane induced arthritis QTL 3 | 4.5 | | joint integrity trait (VT:0010548) | post-insult time to onset of experimental arthritis (CMO:0001450) | 6 | 94968928 | 137848904 | Rat | 12801411 | Schws8 | Schwannoma susceptibility QTL 8 | | | nervous system integrity trait (VT:0010566) | percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017) | 6 | 94968928 | 139968928 | Rat | 8552796 | Vie3 | Viral induced encephalitis QTL 3 | 2.6 | | brain integrity trait (VT:0010579) | encephalitis incidence/prevalence measurement (CMO:0002361) | 6 | 96833997 | 140994061 | Rat | 1358355 | Srcrt4 | Stress Responsive Cort QTL 4 | 6.39 | | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 6 | 100364669 | 140994061 | Rat | 2313399 | Anxrr28 | Anxiety related response QTL 28 | | | aggression-related behavior trait (VT:0015014) | tameness/aggressiveness composite score (CMO:0002136) | 6 | 100671796 | 132340886 | Rat | 1331797 | Bp213 | Blood pressure QTL 213 | 3.291 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 6 | 104085867 | 128713626 | Rat | 71111 | Iddm8 | Insulin dependent diabetes mellitus QTL 8 | 1.9 | 0.002 | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | 6 | 105156861 | 140994061 | Rat | 4145118 | Mcs26 | Mammary carcinoma susceptibility QTL 26 | | 0.0001 | mammary gland integrity trait (VT:0010552) | post-insult time to mammary tumor formation (CMO:0000345) | 6 | 106752656 | 132339866 | Rat | 737976 | Pia24 | Pristane induced arthritis QTL 24 | | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 6 | 112636280 | 140994061 | Rat | 1298087 | Iddm18 | Insulin dependent diabetes mellitus QTL 18 | | 0.0001 | urine glucose amount (VT:0001758) | percentage of study population developing diabetes mellitus during a period of time (CMO:0001114) | 6 | 116506292 | 130245370 | Rat | |
Expression
Sequence
RefSeq Acc Id: |
XR_001838532 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 6 | 122,397,114 - 122,553,101 (-) | NCBI | mRatBN7.2 | 6 | 116,762,814 - 116,822,496 (-) | NCBI | Rnor_6.0 | 6 | 121,478,861 - 121,537,656 (-) | NCBI |
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Sequence: |
CCATAAACTGTACAGCTTTGGTCTACCACACACAGTCAATCATCATGGTACTCAGGCCTCAAAG CACCAGATGAGCCAAATGTGGACCAAGGTCTCCAAAACTAACCACGGAGAGGGAAATGGAAGAG ACCGAGTTGCTGAAAATTTCCCAAAGATCCACAAATTTGCCAAAGTGAAGGATCCAGGACTATC CAGGTTAGAGTCAATAGCCTGGGAGTCCTGCAGTTGAGCAAGAGAAAGACGTGGCCCATGATTT TTGCCAAAACTCCAAGGGAAGGCAAAGAAAAGGGAAAAGGCTATCATTCCTCAGGCAGAGTTCA ACAGGAAGAGAAAGCAATGTTCTCTGCACATGAAGTTCCAGGCTGACATGAGAGTCCTTCAAAA TGCTAGCCACAGGACTTTCCTGAACACATTGGAGTTTCATGGGTTTGCCATATCATAAAGCTAA TTAGGCCCAGGCAGAAAGAAGCTCAACATTCCAAAACCCAGCTAGTTTCTTTAAGAGGTACTGA AAATTGAACACAATCCCCTGCTTGTGAGGACTCCTAAGTGAACCCTACAGCTGTCATTTATTTT GTAGCAACACCACCACCACCACTACCACAACCAGCACCGCCACCAACAACGACAACAAGAAAAG TAATATAAAAAGCCTGTAAGAACCATGTCATTTCATTATCTCTTCGATCGTGGTGTTCTCCCCT GTGTCTGTCTGTAATCCACACAAATGACTGGACTGAGATTCACAGCTGATGGTCTCTCTGGTCG TCTCATAATTCTTGGACACTGCTGATCTGCAACCAATGTGCACCATTATCTAAGGCCAACTTTA AGTTCTTCAAGTTGGATTTTGCTTCATGTACACCTGGAAGAGAAGGTGTTTACCATGGCAGGAG GCACATTTCCCTGAGACAGGCTGACTGAGTTAAAGACCAGAGACTCTAGTGCTAGACTTGTAAT TCTGAGTAAAAATTCTGGTTCAGAATGCACAAGATACAATTCACAGACCACATGAAGCTCAACA AGAAGGAAGACCAAAATGTGGATGCT
hide sequence
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RefSeq Acc Id: |
XR_005506178 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 6 | 122,397,114 - 122,553,101 (-) | NCBI | mRatBN7.2 | 6 | 116,762,814 - 116,822,499 (-) | NCBI |
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RefSeq Acc Id: |
XR_005506179 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 6 | 122,397,114 - 122,553,100 (-) | NCBI | mRatBN7.2 | 6 | 116,762,814 - 116,822,498 (-) | NCBI |
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RefSeq Acc Id: |
XR_005506182 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 6 | 122,397,112 - 122,553,102 (-) | NCBI | mRatBN7.2 | 6 | 116,762,814 - 116,822,512 (-) | NCBI |
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RefSeq Acc Id: |
XR_010052788 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 6 | 122,397,116 - 122,553,098 (-) | NCBI |
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RefSeq Acc Id: |
XR_010052789 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 6 | 122,397,111 - 122,553,102 (-) | NCBI |
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RefSeq Acc Id: |
XR_010052790 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 6 | 122,397,111 - 122,553,104 (-) | NCBI |
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RefSeq Acc Id: |
XR_010052791 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 6 | 122,397,117 - 122,551,666 (-) | NCBI |
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RefSeq Acc Id: |
XR_010052792 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 6 | 122,397,114 - 122,553,101 (-) | NCBI |
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RefSeq Acc Id: |
XR_010052793 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 6 | 122,397,114 - 122,553,101 (-) | NCBI |
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RefSeq Acc Id: |
XR_010052794 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 6 | 122,397,110 - 122,553,102 (-) | NCBI |
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RefSeq Acc Id: |
XR_010052795 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 6 | 122,397,109 - 122,553,104 (-) | NCBI |
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RefSeq Acc Id: |
XR_010052796 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 6 | 122,397,108 - 122,553,109 (-) | NCBI |
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RefSeq Acc Id: |
XR_593141 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 6 | 122,397,113 - 122,553,101 (-) | NCBI | mRatBN7.2 | 6 | 116,762,814 - 116,822,481 (-) | NCBI | Rnor_6.0 | 6 | 121,478,861 - 121,537,656 (-) | NCBI |
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Sequence: |
CCATAAACTGTACAGCTTTGGTCTACCACACACAGTCAATCATCATGGTACTCAGGCCTCAAAG CACCAGATGAGCCAAATGTGGACCAAGGTCTCCAAAACTAACCACGGAGAGGGAAATGGAAGAG ACCGAGTTGCTGAAAATTTCCCAAAGATCCACAAATTTGCCAAAGTGAAGGATCCAGGACTATC CAGGTTAGAGTCAATAGCCTGGGAGTCCTGCAGTTGAGCAAGAGAAAGACGTGGCCCATGATTT TTGCCAAAACTCCAAGGGAAGGCAAAGAAAAGGGAAAAGGCTATCATTCCTCAGGCAGAGTTCA ACAGGAAGAGAAAGCAATGTTCTCTGCACATGAAGTTCCAGGCTGACATGAGAGTCCTTCAAAA TGCTAGCCACAGGACTTTCCTGAACACATTGGAGTTTCATGGGTTTGCCATATCATAAAGCTAA TTAGGCCCAGGCAGAAAGAAGCTCAACATTCCAAAACCCAGCTAGTTTCTTTAAGAGGTACTGA AAATTGAACACAATCCCCTGCTTGTGAGGACTCCTAAGTGAACCCTACAGCTGTCATTTATTTT GTAGCAACACCACCACCACCACTACCACAACCAGCACCGCCACCAACAACGACAACAAGAAAAG TAATATAAAAAGCCTGTAAGAAGTCTCTCTGGTCGTCTCATAATTCTTGGACACTGCTGATCTG CAACCAATGTGCACCATTATCTAAGGCCAACTTTAAGTTCTTCAAGTTGGATTTTGCTTCATGT ACACCTGGAAGAGAAGGTGTTTACCATGGCAGGAGGCACATTTCCCTGAGACAGGCTGACTGAG TTAAAGACCAGAGACTCTAGTGCTAGACTTGTAATTCTGAGTAAAAATTCTGGTTCAGAATGCA CAAGATACAATTCACAGACCACATGAAGCTCAACAAGAAGGAAGACCAAAATGTGGATGCT
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Additional Information
Nomenclature History
Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
2013-12-18 |
LOC102550062 |
uncharacterized LOC102550062 |
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Symbol and Name status set to provisional |
70820 |
PROVISIONAL |
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