LOC102549643 (uncharacterized LOC102549643) - Rat Genome Database

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Gene: LOC102549643 (uncharacterized LOC102549643) Rattus norvegicus
Analyze
Symbol: LOC102549643
Name: uncharacterized LOC102549643
RGD ID: 7645018
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81457,142,144 - 57,143,819 (-)NCBIGRCr8
mRatBN7.21452,929,143 - 52,930,478 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01455,111,223 - 55,112,849 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01455,246,498 - 55,248,017 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1452,106,306 - 52,107,913 (-)NCBICelera
Cytogenetic Map14q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102549643
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XR_005493268
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81457,142,144 - 57,143,819 (-)NCBI
mRatBN7.21452,929,143 - 52,930,477 (-)NCBI
RefSeq Acc Id: XR_005493269
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81457,142,144 - 57,143,819 (-)NCBI
mRatBN7.21452,929,143 - 52,930,477 (-)NCBI
RefSeq Acc Id: XR_359549
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81457,142,144 - 57,143,819 (-)NCBI
mRatBN7.21452,929,143 - 52,930,478 (-)NCBI
Rnor_6.01455,111,223 - 55,112,849 (-)NCBI
Rnor_5.01455,246,498 - 55,248,017 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-15644 BioCyc
NCBI Gene LOC102549643 ENTREZGENE
PhenoGen LOC102549643 PhenoGen
RNAcentral URS0000CCE4F3 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102549643  uncharacterized LOC102549643      Symbol and Name status set to provisional 70820 PROVISIONAL