LOC102548370 (uncharacterized LOC102548370) - Rat Genome Database

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Gene: LOC102548370 (uncharacterized LOC102548370) Rattus norvegicus
Analyze
Symbol: LOC102548370
Name: uncharacterized LOC102548370
RGD ID: 7636337
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: keratin-associated protein 5-1-like
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86127,617,395 - 127,643,215 (-)NCBIGRCr8
mRatBN7.26121,855,315 - 121,864,621 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.06126,594,055 - 126,602,532 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06135,806,881 - 135,813,115 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera6119,342,888 - 119,351,377 (-)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in LOC102548370
17 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat
1298087Iddm18Insulin dependent diabetes mellitus QTL 180.0001urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)6116506292130245370Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)693701310128713626Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6104085867128713626Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6106752656132339866Rat


Expression


Sequence


RefSeq Acc Id: XM_063262700   ⟹   XP_063118770
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86127,617,395 - 127,643,215 (-)NCBI
RefSeq Acc Id: XM_063262701   ⟹   XP_063118771
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86127,617,395 - 127,643,215 (-)NCBI
RefSeq Acc Id: XM_063262702   ⟹   XP_063118772
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86127,617,395 - 127,643,215 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063118770 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118771 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118772 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_063118772   ⟸   XM_063262702
RefSeq Acc Id: XP_063118771   ⟸   XM_063262701
RefSeq Acc Id: XP_063118770   ⟸   XM_063262700


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-36439 BioCyc
NCBI Gene LOC102548370 ENTREZGENE
PhenoGen LOC102548370 PhenoGen
RNAcentral URS0000CCE515 RNACentral
  URS0000CCEA8E RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102548370  uncharacterized LOC102548370      Symbol and Name status set to provisional 70820 PROVISIONAL