LOC102552459 (uncharacterized LOC102552459) - Rat Genome Database

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Gene: LOC102552459 (uncharacterized LOC102552459) Rattus norvegicus
Analyze
Symbol: LOC102552459
Name: uncharacterized LOC102552459
RGD ID: 7576411
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8112,601,681 - 12,665,478 (-)NCBIGRCr8
mRatBN7.2110,782,684 - 10,845,437 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0110,614,217 - 10,675,502 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0112,240,011 - 12,286,503 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera19,252,838 - 9,316,036 (-)NCBICelera
Cytogenetic Map1p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102552459
443 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
1300170Rf6Renal function QTL 63.14renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)1416280711481482Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1592587724697545Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)1985600154856001Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XR_005497227
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8112,601,681 - 12,665,472 (-)NCBI
mRatBN7.2110,782,684 - 10,845,437 (-)NCBI
RefSeq Acc Id: XR_349822
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8112,601,681 - 12,665,478 (-)NCBI
mRatBN7.2110,782,684 - 10,845,433 (-)NCBI
Rnor_6.0110,614,217 - 10,675,502 (-)NCBI
Rnor_5.0112,240,011 - 12,286,503 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-62317 BioCyc
NCBI Gene LOC102552459 ENTREZGENE
PhenoGen LOC102552459 PhenoGen
RNAcentral URS0000CCF3B8 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102552459  uncharacterized LOC102552459      Symbol and Name status set to provisional 70820 PROVISIONAL