Zfp950 (zinc finger protein 950) - Rat Genome Database

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Gene: Zfp950 (zinc finger protein 950) Rattus norvegicus
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Symbol: Zfp950 (Ensembl: LOC102550291)
Name: zinc finger protein 950 (Ensembl:zinc finger protein 658-like)
RGD ID: 7570552
Description: Predicted to enable metal ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to act upstream of or within several processes, including face morphogenesis; smooth muscle cell migration; and vasculogenesis. Orthologous to human ZNF80 (zinc finger protein 80); INTERACTS WITH 1,2-dimethylhydrazine (ortholog); 4,4'-sulfonyldiphenol (ortholog); aflatoxin B1 (ortholog).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: MODEL
Previously known as: LOC102550291; Zfp80; Zfp950l1; zinc finger protein 120-like; zinc finger protein 431-like; zinc finger protein 658-like; zinc finger protein 699-like; zinc finger protein 80; zinc finger protein 950 like 1
RGD Orthologs
Human
Mouse
Bonobo
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81270,234,263 - 270,251,254 (-)NCBIGRCr8
mRatBN7.21260,248,231 - 260,265,211 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1260,236,599 - 260,265,254 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01282,479,755 - 282,513,138 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1282,490,698 - 282,492,912 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01289,814,827 - 289,848,754 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1255,876,062 - 255,904,659 (-)NCBICelera
Cytogenetic Map1q55NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Zfp950
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81270,234,263 - 270,251,254 (-)NCBIGRCr8
mRatBN7.21260,248,231 - 260,265,211 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1260,236,599 - 260,265,254 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01282,479,755 - 282,513,138 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1282,490,698 - 282,492,912 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01289,814,827 - 289,848,754 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1255,876,062 - 255,904,659 (-)NCBICelera
Cytogenetic Map1q55NCBI
ZNF80
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383114,234,631 - 114,237,578 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3114,234,631 - 114,237,578 (-)EnsemblGRCh38hg38GRCh38
GRCh373113,953,478 - 113,956,425 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363115,436,168 - 115,439,115 (-)NCBINCBI36Build 36hg18NCBI36
Build 343115,436,167 - 115,439,115NCBI
Celera3112,361,481 - 112,364,428 (-)NCBICelera
Cytogenetic Map3q13.31NCBI
HuRef3111,327,124 - 111,330,070 (-)NCBIHuRef
CHM1_13113,916,493 - 113,919,439 (-)NCBICHM1_1
T2T-CHM13v2.03116,955,563 - 116,958,509 (-)NCBIT2T-CHM13v2.0
Zfp950
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391961,042,692 - 61,129,297 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1961,042,278 - 61,129,278 (-)EnsemblGRCm39 Ensembl
GRCm381961,053,840 - 61,140,844 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1961,053,840 - 61,140,840 (-)EnsemblGRCm38mm10GRCm38
MGSCv371961,190,887 - 61,216,743 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361961,180,755 - 61,195,453 (-)NCBIMGSCv36mm8
MGSCv361961,184,979 - 61,199,224 (-)NCBIMGSCv36mm8
Celera1963,310,696 - 63,329,140 (-)NCBICelera
Cytogenetic Map19D3NCBI
cM Map1956.67NCBI
ZNF80
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22112,227,584 - 112,228,945 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13112,232,362 - 112,233,723 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03111,373,666 - 111,375,027 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13118,293,825 - 118,295,236 (-)NCBIpanpan1.1PanPan1.1panPan2
LOC110261295
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1656,619,744 - 56,650,827 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZNF80
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12266,623,090 - 66,625,315 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604199,839,408 - 99,840,394 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Zfp950
65 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631690Scl5Serum cholesterol level QTL 52.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1236125214260522016Rat
631836Stl31Serum triglyceride level QTL 314.640.00000487blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1237147813260522016Rat
10053715Scort24Serum corticosterone level QTL 242.130.0088blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1221414816260522016Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
1358890Bp259Blood pressure QTL 2593.06arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1210702053260522016Rat
1600392Bw123Body weight QTL 1230.001body mass (VT:0001259)body weight (CMO:0000012)1223201027260522016Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1216255568260522016Rat
71112Bw115Body weight QTL 11560.0001body mass (VT:0001259)body weight (CMO:0000012)1259647732260522016Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1225126575260522016Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1222363780260522016Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1216255568260522016Rat
631536Lnnr2Liver neoplastic nodule remodeling QTL 22.90.0005liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)1233948574260522016Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat


Expression


Sequence


RefSeq Acc Id: ENSRNOT00000047645   ⟹   ENSRNOP00000043266
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1260,236,779 - 260,265,189 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000047883   ⟹   ENSRNOP00000050302
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1260,236,599 - 260,265,254 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096833   ⟹   ENSRNOP00000085441
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1260,244,289 - 260,265,254 (-)Ensembl
RefSeq Acc Id: XM_039101463   ⟹   XP_038957391
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21260,248,231 - 260,265,211 (-)NCBI
Protein Sequences
Ensembl Protein ENSRNOP00000043266.4
  ENSRNOP00000050302.5
  ENSRNOP00000085441.1
RefSeq Acc Id: XP_038957391   ⟸   XM_039101463
RefSeq Acc Id: ENSRNOP00000085441   ⟸   ENSRNOT00000096833
RefSeq Acc Id: ENSRNOP00000050302   ⟸   ENSRNOT00000047883
RefSeq Acc Id: ENSRNOP00000043266   ⟸   ENSRNOT00000047645
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LT76-F1-model_v2 AlphaFold F1LT76 1-605 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:7570552 AgrOrtholog
BioCyc Gene G2FUF-55216 BioCyc
Ensembl Genes ENSRNOG00000032668 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000047645.4 UniProtKB/TrEMBL
  ENSRNOT00000047883.5 UniProtKB/TrEMBL
  ENSRNOT00000096833.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene LOC102550291 ENTREZGENE
PANTHER KRAB AND ZINC FINGER DOMAIN-CONTAINING UniProtKB/TrEMBL
  PLURIPOTENCY-ASSOCIATED TRANSCRIPT 25-RELATED UniProtKB/TrEMBL
  RIKEN CDNA 9030624G23 GENE-RELATED UniProtKB/TrEMBL
  ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 709 UniProtKB/TrEMBL
  ZNF44 PROTEIN UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-H2C2_2 UniProtKB/TrEMBL
PhenoGen Zfp950 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000032668 RatGTEx
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8I6GCW4_RAT UniProtKB/TrEMBL
  F1LT76_RAT UniProtKB/TrEMBL
  F1LTD4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-02 Zfp950  zinc finger protein 950  Zfp950l1  zinc finger protein 950 like 1  Name and Symbol changed 629549 APPROVED
2023-06-02 Zfp950l1  zinc finger protein 950 like 1  Zfp950  zinc finger protein 950  Name and Symbol changed 629549 APPROVED
2023-06-02 Zfp950  zinc finger protein 950  Zfp80  zinc finger protein 80  Name and Symbol changed 629549 APPROVED
2022-12-29 Zfp80  zinc finger protein 80  LOC102550291  zinc finger protein 658-like  Name and Symbol changed 629549 APPROVED
2022-06-02 LOC102550291  zinc finger protein 658-like  Zfp950  zinc finger protein 950  Data merged from RGD:15003969 737654 PROVISIONAL
2019-11-08 Zfp950  zinc finger protein 950      Symbol and Name status set to provisional 45752 PROVISIONAL
2013-12-18 LOC102550291  zinc finger protein 658-like      Symbol and Name status set to provisional 70820 PROVISIONAL