Vmn2r116l-ps30 (vomeronasal 2, receptor 116 like, pseudogene 30) - Rat Genome Database

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Gene: Vmn2r116l-ps30 (vomeronasal 2, receptor 116 like, pseudogene 30) Rattus norvegicus
Analyze
Symbol: Vmn2r116l-ps30
Name: vomeronasal 2, receptor 116 like, pseudogene 30
RGD ID: 7551986
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC102552844; LOC102552955; vomeronasal type-2 receptor 116-like; vomeronasal type-2 receptor 26-like
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr812,721,913 - 2,738,521 (-)NCBIGRCr8
mRatBN7.2140,042 - 56,215 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.010111,716,537 - 111,722,601 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.010111,292,170 - 111,309,048 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map1p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in Vmn2r116l-ps30
203 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008768523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_008768523   ⟹   XP_008766745
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.010111,716,537 - 111,722,601 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-62520 BioCyc
NCBI Gene LOC102552844 ENTREZGENE
PhenoGen Vmn2r116l-ps30 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Vmn2r116l-ps30  vomeronasal 2, receptor 116 like, pseudogene 30  LOC102552844  vomeronasal type-2 receptor 26-like  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC102552844  vomeronasal type-2 receptor 26-like  LOC102552955  vomeronasal type-2 receptor 26-like  Data merged from RGD:7622909 737654 PROVISIONAL
2013-12-18 LOC102552955  vomeronasal type-2 receptor 26-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-12-17 LOC102552844  vomeronasal type-2 receptor 26-like      Symbol and Name status set to provisional 70820 PROVISIONAL