LOC102547473 (uncharacterized LOC102547473) - Rat Genome Database

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Gene: LOC102547473 (uncharacterized LOC102547473) Rattus norvegicus
Analyze
Symbol: LOC102547473
Name: uncharacterized LOC102547473
RGD ID: 7542438
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8655,280,211 - 55,292,800 (-)NCBIGRCr8
mRatBN7.2649,552,785 - 49,565,067 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0652,252,758 - 52,265,855 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0661,878,786 - 61,894,890 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera648,744,872 - 48,757,007 (-)NCBICelera
Cytogenetic Map6q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102547473
42 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)63569161857730540Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XR_001838371
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8655,280,211 - 55,292,472 (-)NCBI
mRatBN7.2649,552,785 - 49,565,065 (-)NCBI
Rnor_6.0652,252,758 - 52,265,855 (-)NCBI
Sequence:
RefSeq Acc Id: XR_010052592
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8655,280,211 - 55,292,473 (-)NCBI
RefSeq Acc Id: XR_010052593
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8655,280,211 - 55,292,800 (-)NCBI
RefSeq Acc Id: XR_592988
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8655,280,211 - 55,292,472 (-)NCBI
mRatBN7.2649,553,391 - 49,565,066 (-)NCBI
Rnor_6.0652,253,394 - 52,265,855 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-37875 BioCyc
NCBI Gene LOC102547473 ENTREZGENE
PhenoGen LOC102547473 PhenoGen
RNAcentral URS0000CCEFB6 RNACentral
  URS0000CD0358 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-17 LOC102547473  uncharacterized LOC102547473      Symbol and Name status set to provisional 70820 PROVISIONAL