Zfp958l1 (zinc finger protein 958 like 1) - Rat Genome Database

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Gene: Zfp958l1 (zinc finger protein 958 like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Zfp958l1 (Ensembl: LOC102548389)
Name: zinc finger protein 958 like 1 (Ensembl:zinc finger protein 709-like)
RGD ID: 7541342
Description: Predicted to enable metal ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Orthologous to human ZNF490 (zinc finger protein 490).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AABR07035107.1; LOC102548389; Zfp958; zinc finger protein 431-like; zinc finger protein 709-like; zinc finger protein 958; zinc finger protein 958-like 1
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8129,449,957 - 9,475,149 (-)NCBIGRCr8
mRatBN7.2124,413,472 - 4,438,668 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl124,415,710 - 4,438,642 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0124,718,926 - 4,743,293 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl124,737,817 - 4,741,997 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.0126,844,186 - 6,868,743 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera125,990,682 - 5,995,721 (-)NCBICelera
Cytogenetic Map12p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in Zfp958l1
262 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)1219318387Rat
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)127977298525593Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
724526Uae3Urinary albumin excretion QTL 34.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)12390696910373166Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000035992   ⟹   ENSRNOP00000034232
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl124,415,710 - 4,438,642 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119165   ⟹   ENSRNOP00000078763
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl124,415,710 - 4,438,511 (-)Ensembl
RefSeq Acc Id: XM_063271846   ⟹   XP_063127916
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8129,449,957 - 9,475,149 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063127916 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000034232.3
  ENSRNOP00000078763.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000078763   ⟸   ENSRNOT00000119165
RefSeq Acc Id: ENSRNOP00000034232   ⟸   ENSRNOT00000035992
RefSeq Acc Id: XP_063127916   ⟸   XM_063271846
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LYY5-F1-model_v2 AlphaFold F1LYY5 1-464 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:7541342 AgrOrtholog
BioCyc Gene G2FUF-20252 BioCyc
Ensembl Genes ENSRNOG00000000891 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000035992.3 UniProtKB/TrEMBL
  ENSRNOT00000119165.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene LOC102548389 ENTREZGENE
PANTHER GASTRULA ZINC FINGER PROTEIN XLCGF49.1-LIKE-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN ZIC AND GLI UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-H2C2_2 UniProtKB/TrEMBL
PhenoGen Zfp958l1 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000891 RatGTEx
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8I5ZLM7_RAT UniProtKB/TrEMBL
  F1LYY5_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Zfp958l1  zinc finger protein 958 like 1  LOC102548389  zinc finger protein 709-like  Symbol and Name Changed 1299863 APPROVED
2022-06-02 LOC102548389  zinc finger protein 709-like  Zfp958l1  zinc finger protein 958-like 1  Data merged from RGD:15003218 737654 PROVISIONAL
2020-10-01 Zfp958l1  zinc finger protein 958-like 1  Zfp958  zinc finger protein 958  Name and Symbol changed 629549 APPROVED
2020-04-30 Zfp958  zinc finger protein 958  AABR07035107.1    Symbol and/or name change 19259462 PROVISIONAL
2019-11-08 AABR07035107.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2013-12-17 LOC102548389  zinc finger protein 709-like      Symbol and Name status set to provisional 70820 PROVISIONAL