LOC102556510 (uncharacterized LOC102556510) - Rat Genome Database

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Gene: LOC102556510 (uncharacterized LOC102556510) Rattus norvegicus
Analyze
Symbol: LOC102556510
Name: uncharacterized LOC102556510
RGD ID: 7532379
Description:
Type: ncrna
RefSeq Status: MODEL
Previously known as: LOC102546459; uncharacterized LOC102546459
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86118,430,621 - 118,525,887 (-)NCBIGRCr8
mRatBN7.26112,647,333 - 112,795,278 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.06117,370,839 - 117,444,902 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06126,646,898 - 126,671,017 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera6110,354,378 - 110,427,345 (-)NCBICelera
Cytogenetic Map6q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102556510
1141 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)671201409116201409Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)672202632115200186Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)672202632117202632Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)693701310128713626Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6104085867128713626Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6106752656132339866Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_001838519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001838520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001838521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001838522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001838523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001838525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_593131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_593132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_601541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_601542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XR_001838519
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86118,492,652 - 118,525,887 (-)NCBI
mRatBN7.26112,760,969 - 112,795,278 (-)NCBI
Sequence:
RefSeq Acc Id: XR_010052764
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86118,430,621 - 118,525,822 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-36616 BioCyc
NCBI Gene LOC102556510 ENTREZGENE
PhenoGen LOC102556510 PhenoGen
RNAcentral URS0000CCE7ED RNACentral
  URS0000CCEA81 RNACentral
  URS0000CCEBCA RNACentral
  URS0000CCF69A RNACentral
  URS0000CCF9A7 RNACentral
  URS0000CD013E RNACentral
  URS0000CD0363 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 LOC102556510  uncharacterized LOC102556510  LOC102546459  uncharacterized LOC102546459  Data merged from RGD:7581830 737654 PROVISIONAL
2013-12-18 LOC102546459  uncharacterized LOC102546459      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-12-17 LOC102556510  uncharacterized LOC102556510      Symbol and Name status set to provisional 70820 PROVISIONAL