LOC102551210 (uncharacterized LOC102551210) - Rat Genome Database

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Gene: LOC102551210 (uncharacterized LOC102551210) Rattus norvegicus
Analyze
Symbol: LOC102551210
Name: uncharacterized LOC102551210
RGD ID: 7522754
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8614,458,962 - 14,487,353 (-)NCBIGRCr8
mRatBN7.268,706,014 - 8,734,589 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.069,195,902 - 9,225,088 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.069,116,969 - 9,134,153 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera68,432,890 - 8,461,570 (-)NCBICelera
Cytogenetic Map6q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102551210
72 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
738023Alc17Alcohol consumption QTL 173.10.003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)6127574569Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449734434305Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
1354616Despr12Despair related QTL 120.0012locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)6127574569Rat
1549905Stresp10Stress response QTL 106.830.0066stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)6127574569Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
2300190Bmd52Bone mineral density QTL 5211.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)6127574569Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293706Bmd20Bone mineral density QTL 204.30.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6507449719988050Rat
2300176Bmd51Bone mineral density QTL 5111.70.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)6127574569Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_001838266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001838267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001843872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001843873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001843874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001843875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001843876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001843877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001843878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001843879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_592868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XR_005505655
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8614,459,099 - 14,487,351 (-)NCBI
mRatBN7.268,706,147 - 8,734,587 (-)NCBI
RefSeq Acc Id: XR_010052459
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8614,458,962 - 14,487,351 (-)NCBI
RefSeq Acc Id: XR_010052460
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8614,459,033 - 14,487,352 (-)NCBI
RefSeq Acc Id: XR_010052461
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8614,458,997 - 14,487,352 (-)NCBI
RefSeq Acc Id: XR_010052462
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8614,470,399 - 14,487,322 (-)NCBI
RefSeq Acc Id: XR_010052463
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8614,459,099 - 14,487,353 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-38682 BioCyc
NCBI Gene LOC102551210 ENTREZGENE
PhenoGen LOC102551210 PhenoGen
RNAcentral URS0000CCE7A3 RNACentral
  URS0000CCEF2B RNACentral
  URS0000CD0158 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-17 LOC102551210  uncharacterized LOC102551210      Symbol and Name status set to provisional 70820 PROVISIONAL