Smim44 (small integral membrane protein 44) - Rat Genome Database

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Gene: Smim44 (small integral membrane protein 44) Rattus norvegicus
Analyze
Symbol: Smim44
Name: small integral membrane protein 44
RGD ID: 7506385
Description:
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC102552675; uncharacterized LOC102552675; uncharacterized protein LOC102552675
RGD Orthologs
Human
Mouse
Bonobo
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr878,968,893 - 8,970,123 (-)NCBIGRCr8
mRatBN7.278,318,157 - 8,319,387 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl78,318,166 - 8,326,274 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0711,187,818 - 11,189,089 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0711,354,710 - 11,356,987 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera76,507,222 - 6,508,493 (-)NCBICelera
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Smim44
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr878,968,893 - 8,970,123 (-)NCBIGRCr8
mRatBN7.278,318,157 - 8,319,387 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl78,318,166 - 8,326,274 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0711,187,818 - 11,189,089 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0711,354,710 - 11,356,987 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera76,507,222 - 6,508,493 (-)NCBICelera
Cytogenetic Map7q11NCBI
SMIM44
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38193,482,110 - 3,483,441 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl193,482,110 - 3,483,441 (-)EnsemblGRCh38hg38GRCh38
GRCh37193,482,108 - 3,483,439 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map19p13.3NCBI
T2T-CHM13v2.0193,460,277 - 3,461,608 (-)NCBIT2T-CHM13v2.0
Gm48552
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391081,226,151 - 81,227,389 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1081,224,839 - 81,227,101 (+)EnsemblGRCm39 Ensembl
GRCm381081,390,317 - 81,391,555 (+)NCBIGRCm38GRCm38mm10GRCm38
Cytogenetic Map10C1NCBI
SMIM44
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2207,880,998 - 7,884,777 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1197,112,616 - 7,116,362 (-)NCBINHGRI_mPanPan1

Variants

.
Variants in Smim44
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000113121   ⟹   ENSRNOP00000085423
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl78,318,166 - 8,326,274 (-)Ensembl
RefSeq Acc Id: NM_001408772   ⟹   NP_001395701
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr878,968,893 - 8,970,123 (-)NCBI
mRatBN7.278,318,157 - 8,319,387 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001395701 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000085423
  ENSRNOP00000085423.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000085423   ⟸   ENSRNOT00000113121
RefSeq Acc Id: NP_001395701   ⟸   NM_001408772
- UniProtKB: A0A8I6A1C1 (UniProtKB/TrEMBL),   A6K882 (UniProtKB/TrEMBL)

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-35026 BioCyc
Ensembl Genes ENSRNOG00000066999 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000113121 ENTREZGENE
  ENSRNOT00000113121.1 UniProtKB/TrEMBL
KEGG Report rno:102552675 UniProtKB/TrEMBL
NCBI Gene LOC102552675 ENTREZGENE
PhenoGen Smim44 PhenoGen
RatGTEx ENSRNOG00000066999 RatGTEx
UniProt A0A8I6A1C1 ENTREZGENE, UniProtKB/TrEMBL
  A6K882 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-02-01 Smim44  small integral membrane protein 44  LOC102552675  uncharacterized LOC102552675  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-12-17 LOC102552675  uncharacterized LOC102552675      Symbol and Name status set to provisional 70820 PROVISIONAL