Mir6325 (microRNA 6325) - Rat Genome Database

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Pathways
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Gene: Mir6325 (microRNA 6325) Rattus norvegicus
Analyze
Symbol: Mir6325
Name: microRNA 6325
RGD ID: 7489018
Description: INTERACTS WITH atrazine
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: rno-mir-6325
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81149,148,672 - 49,148,812 (+)NCBIGRCr8
mRatBN7.21135,679,196 - 35,679,336 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1135,679,196 - 35,679,336 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1144,329,764 - 44,329,904 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01137,001,136 - 37,001,276 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01136,153,520 - 36,153,660 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01136,729,251 - 36,729,391 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1136,729,251 - 36,729,391 (+)EnsemblRnor6.0rn6Rnor6.0
Celera1132,798,571 - 32,798,711 (-)NCBICelera
Cytogenetic Map11q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
atrazine  (EXP)

References
Additional References at PubMed
PMID:16381832   PMID:22605339   PMID:22908386  


Genomics

Variants

.
Variants in Mir6325
1 total Variants
miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:5529
Count of gene targets:4019
Count of transcripts:4311
Interacting mature miRNAs:rno-miR-6325
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system nervous system renal system reproductive system
High
Medium
Low 1 1 9 4
Below cutoff 3 6

Sequence

Nucleotide Sequences
RefSeq Transcripts NR_106697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000072252
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1135,679,196 - 35,679,336 (+)Ensembl
Rnor_6.0 Ensembl1136,729,251 - 36,729,391 (+)Ensembl
RefSeq Acc Id: NR_106697
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81149,148,672 - 49,148,812 (+)NCBI
mRatBN7.21135,679,196 - 35,679,336 (+)NCBI
Rnor_6.01136,729,251 - 36,729,391 (+)NCBI
Celera1132,798,571 - 32,798,711 (-)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-21705 BioCyc
Ensembl Genes ENSRNOG00000049963 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000072252 ENTREZGENE
miRBase MI0021849 ENTREZGENE
NCBI Gene Mir6325 ENTREZGENE
PhenoGen Mir6325 PhenoGen
RatGTEx ENSRNOG00000049963 RatGTEx
RNAcentral URS000075B332 RNACentral
  URS000075ECC3 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-04-09 Mir6325  microRNA 6325  Mir6325  microRNA mir-6325  Name updated 61478 APPROVED
2013-12-10 Mir6325  microRNA mir-6325      Symbol and Name status set to provisional 70820 PROVISIONAL